Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   I6J15_RS06970 Genome accession   NZ_CP068056
Coordinates   1381011..1381451 (+) Length   146 a.a.
NCBI ID   WP_111712857.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1376011..1386451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS06940 (I6J15_06940) queE 1376313..1377032 (+) 720 Protein_1335 7-carboxy-7-deazaguanine synthase QueE -
  I6J15_RS06945 (I6J15_06945) queF 1377182..1377673 (+) 492 WP_058814005.1 preQ(1) synthase -
  I6J15_RS06950 (I6J15_06950) - 1377710..1378207 (-) 498 WP_111712859.1 HdeD family acid-resistance protein -
  I6J15_RS06955 (I6J15_06955) gdhA 1378444..1379793 (+) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -
  I6J15_RS09210 - 1379951..1380265 (+) 315 WP_233422855.1 hypothetical protein -
  I6J15_RS09215 - 1380274..1380459 (+) 186 WP_231872486.1 GNAT family N-acetyltransferase -
  I6J15_RS06965 (I6J15_06965) - 1380456..1380866 (+) 411 WP_111712858.1 peptide deformylase -
  I6J15_RS06970 (I6J15_06970) rcrR 1381011..1381451 (+) 441 WP_111712857.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6J15_RS06975 (I6J15_06975) rcrP 1381455..1383269 (+) 1815 WP_020916924.1 ABC transporter ATP-binding protein Regulator
  I6J15_RS06980 (I6J15_06980) rcrQ 1383259..1385031 (+) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  I6J15_RS06985 (I6J15_06985) - 1385131..1385766 (+) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  I6J15_RS06990 (I6J15_06990) - 1385769..1386449 (+) 681 WP_020916921.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16994.56 Da        Isoelectric Point: 9.6897

>NTDB_id=526692 I6J15_RS06970 WP_111712857.1 1381011..1381451(+) (rcrR) [Streptococcus lutetiensis strain FDAARGOS_1158]
MRDKDLFSQFRYFINLMENRVHELGGQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKGIDAFHTAIHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=526692 I6J15_RS06970 WP_111712857.1 1381011..1381451(+) (rcrR) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGCGAGACAAAGATTTGTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAGCTCGGTGGGCA
GCATGGTGTTGAAAATCTCGCTGGTCCGCAGGGATTTGCAGTTCTTTATTTACGTGAGAATGAAGACAAAGAAGTTTTCA
TCAAGGACATTGAACGTAAGCTTAAGATTTCAAAATCTGTGACCAGTAATTTGATTAAACGAATGGAGAAGAATGGCTTT
ATTGAGGTGGTTCCGTCGGAGGTTGATAAGCGTTATAAGCGTGTCGTCTTGACTGAGCTGGGTAAAGCAAAATCCAAAGG
CATCGATGCTTTTCATACTGCTATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAAGAGCTAGAAATTTCTGGTCGTG
TTTTTGATCGTATTTTGAAAAACTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

53.846

97.945

0.527