Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   I6J15_RS06980 Genome accession   NZ_CP068056
Coordinates   1383259..1385031 (+) Length   590 a.a.
NCBI ID   WP_020916923.1    Uniprot ID   A0AB33AM80
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378259..1390031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS06955 (I6J15_06955) gdhA 1378444..1379793 (+) 1350 WP_043895060.1 NADP-specific glutamate dehydrogenase -
  I6J15_RS09210 - 1379951..1380265 (+) 315 WP_233422855.1 hypothetical protein -
  I6J15_RS09215 - 1380274..1380459 (+) 186 WP_231872486.1 GNAT family N-acetyltransferase -
  I6J15_RS06965 (I6J15_06965) - 1380456..1380866 (+) 411 WP_111712858.1 peptide deformylase -
  I6J15_RS06970 (I6J15_06970) rcrR 1381011..1381451 (+) 441 WP_111712857.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6J15_RS06975 (I6J15_06975) rcrP 1381455..1383269 (+) 1815 WP_020916924.1 ABC transporter ATP-binding protein Regulator
  I6J15_RS06980 (I6J15_06980) rcrQ 1383259..1385031 (+) 1773 WP_020916923.1 ABC transporter ATP-binding protein Regulator
  I6J15_RS06985 (I6J15_06985) - 1385131..1385766 (+) 636 WP_020916922.1 GTP pyrophosphokinase family protein -
  I6J15_RS06990 (I6J15_06990) - 1385769..1386449 (+) 681 WP_020916921.1 response regulator transcription factor -
  I6J15_RS06995 (I6J15_06995) - 1386458..1387684 (+) 1227 WP_020916920.1 sensor histidine kinase -
  I6J15_RS07000 (I6J15_07000) - 1387726..1388571 (-) 846 WP_061407966.1 aldo/keto reductase -
  I6J15_RS07005 (I6J15_07005) - 1388633..1389547 (-) 915 WP_111712856.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65326.44 Da        Isoelectric Point: 4.9659

>NTDB_id=526694 I6J15_RS06980 WP_020916923.1 1383259..1385031(+) (rcrQ) [Streptococcus lutetiensis strain FDAARGOS_1158]
MENKKKVSFYGRMEPYIKGFQFPFILAVIGAIISATVTVIGPDKLKEITNTIMKGLTPTKMGTIPGVDLDKVGQIALTLA
ILYVISAVIGYIQNFTVATIVQRFSQRLRAAIQVKIDRVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSVVL
LIGSIFMMFHSNVSMALTAIGSVFIGFLLVVVIMGSSQPLFKRQQNNLAAVNGYVEEIYSGHNVVTSYNASEETSQAFKI
LNTNLYKSMWQSQFLSGIMMPLMIFIGNFGYVMVCVVGAVKVINGDITMGDVVAFMSYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEEEMEDESHKERQLSDVKGEVTFDNVFFGYSRDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQIAIDGVDTRLMSREEVHDQFAMVLQDTWLFEGTIKENLIYNQENITNEQVVAAAKAVGVHHFIMTLPDGYDT
YLDDSVTLSIGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKD
GNIIEQGNHDELMTEGGFYADLYNSQFEVA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=526694 I6J15_RS06980 WP_020916923.1 1383259..1385031(+) (rcrQ) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGGAAAATAAGAAAAAAGTATCCTTCTATGGCAGAATGGAGCCATACATTAAAGGTTTCCAATTTCCATTTATCCTTGC
GGTAATTGGAGCCATTATTTCAGCGACTGTTACTGTTATTGGTCCTGATAAATTAAAAGAAATTACAAATACCATTATGA
AAGGCTTGACACCAACTAAAATGGGGACTATCCCTGGTGTTGACCTAGATAAGGTTGGGCAAATTGCTTTAACTCTTGCT
ATTTTATATGTGATTTCTGCAGTTATTGGTTATATTCAAAACTTTACAGTAGCTACCATCGTTCAACGTTTCTCTCAACG
TTTGCGTGCAGCTATCCAAGTTAAAATTGACCGTGTGCCGCTAAATTATTTTGATAGTCATTCACAAGGGGATACTCTTT
CTCGTGTGACAAATGACGTGGATTTGCTTGGTCAGTCTCTTAACCAAAGTTTGGGAACATTGGTCACTTCAGTAGTACTT
TTGATTGGTTCGATTTTCATGATGTTCCATTCAAATGTCAGCATGGCACTAACAGCAATTGGTTCGGTCTTTATCGGATT
CTTGCTAGTTGTTGTGATTATGGGGTCATCACAACCCTTGTTTAAACGCCAACAAAATAACTTGGCAGCAGTTAATGGTT
ATGTCGAAGAAATCTATTCTGGCCATAATGTAGTGACAAGCTATAACGCTTCTGAAGAAACTAGCCAAGCATTTAAAATT
CTTAACACAAATCTCTATAAATCAATGTGGCAATCGCAATTCTTATCAGGTATTATGATGCCGCTCATGATTTTCATTGG
TAACTTTGGTTATGTGATGGTCTGTGTAGTTGGTGCGGTTAAGGTGATTAATGGCGATATTACCATGGGTGATGTGGTTG
CTTTTATGAGTTACGTGCGTATTTTCTCACAACCTCTTTCTCAAATTGCTCAAGCTTTCACACAAATGCAATCAGCAACA
GCCGCTATGAGTCGTGTTTTTGAATTTCTTGAAGAAGAGGAAATGGAAGATGAATCACACAAAGAACGTCAATTGTCTGA
TGTTAAAGGTGAAGTTACTTTTGATAATGTCTTCTTTGGTTATTCTAGAGATAAAACCATTATCCATGATTTCTCTGCCG
TGGCAAAACCTGGTCAAAAGGTTGCTATCGTTGGACCAACTGGTGCTGGTAAGACAACCATCGTTAACCTTCTTATGAAA
TTCTATGAAATTGATAAAGGTCAAATTGCTATCGATGGTGTTGACACACGTTTGATGTCACGAGAAGAAGTCCATGACCA
ATTTGCAATGGTACTTCAAGATACTTGGTTGTTTGAAGGTACAATCAAAGAAAACTTGATTTACAACCAAGAAAATATCA
CTAATGAACAAGTAGTAGCAGCAGCTAAAGCAGTTGGTGTTCACCACTTTATCATGACGCTTCCTGATGGCTATGACACA
TACCTTGATGACTCTGTTACCCTTTCAATCGGTCAAAAACAACTCTTGACCATTGCGCGTGCCCTCTTGAAAGATGCTCC
GCTTCTTATTCTAGATGAAGCAACATCATCAGTCGATACACGTACGGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACCTCGTTTGTCATTGCTCACCGTTTATCAACGATTAAAAATGCTGACTTAATCCTTGTGATGAAAGAT
GGTAACATCATCGAGCAAGGAAATCATGATGAGTTGATGACAGAAGGTGGCTTCTATGCTGACCTTTACAACTCACAGTT
TGAAGTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

72.635

100

0.729