Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6J15_RS04555 Genome accession   NZ_CP068056
Coordinates   885634..886140 (+) Length   168 a.a.
NCBI ID   WP_020917424.1    Uniprot ID   A0AB33ANQ2
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 884134..885087 885634..886140 flank 547


Gene organization within MGE regions


Location: 884134..886140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS04545 (I6J15_04545) - 884134..885087 (-) 954 WP_111712989.1 IS30 family transposase -
  I6J15_RS04550 (I6J15_04550) rpsF 885332..885622 (+) 291 WP_006531977.1 30S ribosomal protein S6 -
  I6J15_RS04555 (I6J15_04555) ssbA 885634..886140 (+) 507 WP_020917424.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18641.27 Da        Isoelectric Point: 4.7294

>NTDB_id=526681 I6J15_RS04555 WP_020917424.1 885634..886140(+) (ssbA) [Streptococcus lutetiensis strain FDAARGOS_1158]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGEFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=526681 I6J15_RS04555 WP_020917424.1 885634..886140(+) (ssbA) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGAATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAACTTTGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.112

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369