Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   I6J17_RS04360 Genome accession   NZ_CP068054
Coordinates   852355..854169 (-) Length   604 a.a.
NCBI ID   WP_029141806.1    Uniprot ID   A0A8B4BS23
Organism   Heyndrickxia coagulans strain FDAARGOS_1160     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 847355..859169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J17_RS04330 (I6J17_04330) - 847909..848292 (-) 384 WP_029141801.1 hypothetical protein -
  I6J17_RS04335 (I6J17_04335) - 848429..849013 (+) 585 WP_029141802.1 CYTH domain-containing protein -
  I6J17_RS04340 (I6J17_04340) - 849010..849789 (+) 780 WP_029141803.1 lytic transglycosylase domain-containing protein -
  I6J17_RS04345 (I6J17_04345) - 850226..850627 (+) 402 WP_029141804.1 globin -
  I6J17_RS04350 (I6J17_04350) - 850624..851481 (+) 858 WP_029141805.1 ClpXP adapter SpxH family protein -
  I6J17_RS04355 (I6J17_04355) - 851772..851963 (+) 192 WP_017553961.1 hypothetical protein -
  I6J17_RS04360 (I6J17_04360) pepF 852355..854169 (-) 1815 WP_029141806.1 oligoendopeptidase F Regulator
  I6J17_RS04365 (I6J17_04365) - 854237..855463 (-) 1227 WP_236579055.1 competence protein CoiA -
  I6J17_RS04370 (I6J17_04370) mecA 855739..856398 (-) 660 WP_029141808.1 adaptor protein MecA -
  I6J17_RS04375 (I6J17_04375) spxA 856762..857157 (-) 396 WP_013858789.1 transcriptional regulator SpxA -
  I6J17_RS04380 (I6J17_04380) - 857436..858377 (-) 942 WP_029141810.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69273.92 Da        Isoelectric Point: 5.0676

>NTDB_id=526600 I6J17_RS04360 WP_029141806.1 852355..854169(-) (pepF) [Heyndrickxia coagulans strain FDAARGOS_1160]
MENGKKVHALPSRNEVPDELTWRLEDIFPSDDDWNKEYEAVKEKLSGAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGMDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDIAIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=526600 I6J17_RS04360 WP_029141806.1 852355..854169(-) (pepF) [Heyndrickxia coagulans strain FDAARGOS_1160]
ATGGAAAACGGGAAAAAAGTACACGCGTTGCCAAGCCGGAACGAGGTCCCTGACGAATTAACTTGGAGGCTTGAGGATAT
TTTTCCGAGTGACGATGACTGGAATAAAGAATATGAAGCAGTAAAAGAAAAGCTGTCCGGTGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACGGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATGGACAGCAAAGCGAAAAGCCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGCTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAGACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCGCTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAGGCGAAAGAGATCGTGCTTGACGGACTCCATCCGCTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCGC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BS23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.338

98.013

0.493