Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I6J18_RS06240 Genome accession   NZ_CP068053
Coordinates   1139748..1140794 (-) Length   348 a.a.
NCBI ID   WP_040376537.1    Uniprot ID   A0A974NP47
Organism   Peribacillus psychrosaccharolyticus strain FDAARGOS_1161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134748..1145794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J18_RS06220 (I6J18_06215) - 1135516..1136439 (-) 924 WP_040376541.1 dipeptidase -
  I6J18_RS06225 (I6J18_06220) - 1136515..1136775 (-) 261 WP_040376540.1 stage V sporulation protein S -
  I6J18_RS06230 (I6J18_06225) - 1136973..1137770 (-) 798 WP_040376539.1 TIGR00282 family metallophosphoesterase -
  I6J18_RS06235 (I6J18_06230) rny 1137866..1139428 (-) 1563 WP_040376538.1 ribonuclease Y -
  I6J18_RS06240 (I6J18_06235) recA 1139748..1140794 (-) 1047 WP_040376537.1 recombinase RecA Machinery gene
  I6J18_RS06245 (I6J18_06240) cinA 1141291..1142535 (-) 1245 WP_040376536.1 competence/damage-inducible protein A Machinery gene
  I6J18_RS06250 (I6J18_06245) pgsA 1142556..1143140 (-) 585 WP_040374100.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  I6J18_RS06255 (I6J18_06250) - 1143205..1144107 (-) 903 WP_040374101.1 RodZ domain-containing protein -
  I6J18_RS06260 (I6J18_06255) - 1144125..1144916 (-) 792 WP_040374102.1 DUF3388 domain-containing protein -
  I6J18_RS06265 (I6J18_06260) - 1145207..1145464 (-) 258 WP_040374103.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37908.11 Da        Isoelectric Point: 5.2055

>NTDB_id=526540 I6J18_RS06240 WP_040376537.1 1139748..1140794(-) (recA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
MSDRQAALEMALKQIEKQFGKGSIMKMGEKTDTRISTSSSGSLAIDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKAGGTAAFIDAEHALDPAYSSKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVNILVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGAINKSNTIAIFINQVREKIGIMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNRA
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEIIDMASELDIVQKSGSWFSYNGDRLGQGRENAKLFLKSNQTLQDEIYKK
IRDHYNLDSEHVAVKENEKEEELELDLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=526540 I6J18_RS06240 WP_040376537.1 1139748..1140794(-) (recA) [Peribacillus psychrosaccharolyticus strain FDAARGOS_1161]
GTGAGTGATCGTCAAGCGGCATTAGAAATGGCTTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCAATAATGAAAAT
GGGTGAAAAGACAGATACAAGAATTTCCACTAGTTCAAGTGGATCTTTGGCTATTGATGTAGCTTTAGGGGTAGGCGGCT
ATCCAAGAGGGCGAGTCATTGAAATATACGGCCCAGAAAGCTCAGGTAAAACGACTGTTGCCTTACATGCTATCGCTGAA
GTTCAGAAAGCTGGCGGCACAGCTGCTTTTATTGATGCTGAACATGCATTAGATCCTGCCTACTCTTCAAAACTTGGCGT
AAATATTGATGAATTGCTGCTTTCACAGCCAGATACTGGTGAACAAGCGCTTGAGATAGCTGAGGCTCTTGTCCGCAGCG
GCGCTGTAAATATACTTGTTATTGATTCCGTGGCAGCGTTGGTTCCTAAAGCTGAAATTGAAGGTGAAATGGGAGATTCT
CATATGGGTCTGCAGGCAAGAATGATGTCTCAGGCACTTCGTAAGCTTTCAGGTGCAATTAATAAATCAAATACAATTGC
TATTTTCATTAACCAGGTCCGAGAAAAAATCGGTATTATGTTTGGTAATCCTGAAACCACTCCAGGAGGCCGCGCGCTTA
AGTTTTATTCGACTGTACGTCTTGAAGTTCGTCGTGCTGAACAATTAAAACAAGGAAATGATATTGTTGGTAATAGAGCA
AAAGTAAAAGTGGTGAAAAATAAAGTAGCACCACCGTTCCGTGTTGCTGAAGTTGATATCATGTACGGAGAGGGTATTTC
ACGTGAAGGTGAAATTATCGATATGGCTTCGGAATTGGATATTGTTCAAAAAAGCGGATCATGGTTCTCATATAATGGCG
ACCGTCTTGGCCAAGGACGCGAAAATGCAAAACTATTCTTGAAGTCGAATCAAACGCTTCAAGATGAAATTTATAAGAAA
ATTCGTGATCATTATAATTTAGACAGCGAGCATGTTGCCGTAAAGGAAAATGAAAAAGAAGAAGAACTTGAGTTAGATTT
AGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.831

95.402

0.79
  recA Latilactobacillus sakei subsp. sakei 23K

72.941

97.701

0.713
  recA Streptococcus pyogenes NZ131

64.689

100

0.658
  recA Streptococcus mitis NCTC 12261

64

100

0.644
  recA Streptococcus pneumoniae TIGR4

64.553

99.713

0.644
  recA Streptococcus pneumoniae D39

64.553

99.713

0.644
  recA Streptococcus mutans UA159

64.553

99.713

0.644
  recA Streptococcus pneumoniae Rx1

64.553

99.713

0.644
  recA Streptococcus pneumoniae R6

64.553

99.713

0.644
  recA Streptococcus mitis SK321

63.714

100

0.641
  recA Lactococcus lactis subsp. cremoris KW2

64.688

96.839

0.626
  recA Ralstonia pseudosolanacearum GMI1000

64.939

94.253

0.612
  recA Helicobacter pylori 26695

60.641

98.563

0.598
  recA Helicobacter pylori strain NCTC11637

60.641

98.563

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

97.701

0.598
  recA Neisseria gonorrhoeae strain FA1090

63.863

92.241

0.589
  recA Neisseria gonorrhoeae MS11

63.863

92.241

0.589
  recA Neisseria gonorrhoeae MS11

63.863

92.241

0.589
  recA Acinetobacter baumannii D1279779

59.42

99.138

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.966

0.583
  recA Acinetobacter baylyi ADP1

59.184

98.563

0.583
  recA Vibrio cholerae strain A1552

62.928

92.241

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.928

92.241

0.58
  recA Glaesserella parasuis strain SC1401

62.813

91.954

0.578
  recA Pseudomonas stutzeri DSM 10701

60.938

91.954

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

91.954

0.546