Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JJQ97_RS08380 Genome accession   NZ_CP068034
Coordinates   1881403..1883619 (+) Length   738 a.a.
NCBI ID   WP_201419704.1    Uniprot ID   -
Organism   Pseudomonas syringae strain BIM B-268     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1876403..1888619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ97_RS08365 (JJQ97_08010) - 1878742..1879365 (+) 624 WP_046237665.1 glutathione S-transferase -
  JJQ97_RS08370 (JJQ97_08015) - 1879549..1880481 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  JJQ97_RS08375 (JJQ97_08020) - 1880478..1881266 (+) 789 WP_153221391.1 ABC transporter permease -
  JJQ97_RS08380 (JJQ97_08025) comA 1881403..1883619 (+) 2217 WP_201419704.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JJQ97_RS08385 (JJQ97_08030) exbB 1883662..1884378 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JJQ97_RS08390 (JJQ97_08035) - 1884375..1884806 (+) 432 WP_201419705.1 biopolymer transporter ExbD -
  JJQ97_RS08395 (JJQ97_08040) lpxK 1884806..1885801 (+) 996 WP_003409586.1 tetraacyldisaccharide 4'-kinase -
  JJQ97_RS08400 (JJQ97_08045) - 1885819..1886004 (+) 186 WP_002552679.1 Trm112 family protein -
  JJQ97_RS08405 (JJQ97_08050) kdsB 1886001..1886765 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JJQ97_RS08410 (JJQ97_08055) murB 1886800..1887819 (+) 1020 WP_201419706.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80239.37 Da        Isoelectric Point: 10.1985

>NTDB_id=526454 JJQ97_RS08380 WP_201419704.1 1881403..1883619(+) (comA) [Pseudomonas syringae strain BIM B-268]
MRTGMIALALGLLALRFLPALPPTWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQSVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVSILILIFSGRLGAWSWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVVVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLGAVAAALPAWLPTAVPVWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAMLLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVNAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLDIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=526454 JJQ97_RS08380 WP_201419704.1 1881403..1883619(+) (comA) [Pseudomonas syringae strain BIM B-268]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTGCCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTCCGTACCTATCCGCTGGCGTTGTTCCTGCTCGGTTTCACCT
GGGCCTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTGCAAGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGTCAGTCCGTGAACAGCGGCGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCGGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTAGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCGATTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGATTGTCGAGTACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCACCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGCTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCACTGGGCTATGGACTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGGCACCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCAGCATTCTGATCCTGATTTTCAGCGGGCGTCTCGGCGC
CTGGAGCTGGTGGCAAAGCTGGACACGGGCGCAATGGCTGATCGCCGTCGGCTTGTTGCCGATTCTGCTGGCGCTCAACC
TGCCGATCAGCCTCAGTGGACCGTTTGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGGTCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCGGTCCCCGTGGTCGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGGCGCGGTGGCTGCAGCATTGCCGGCCTGGCTGCCCACGGCGGTGCCGGTCTGGGCATGGTGGTTGAGTC
TGCTCGGGGCGTTGCTCTTGTTGCTGCCCAAGGGTGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAGCTGGATGTGGGGCAGGGTCTGGCGATGCTCCT
GCGCACCCGCAATCACACCCTCCTGTATGACGCAGGTCCACGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCGGGTGTTCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGAGGTGCA
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGAGTGCTGGGCGGCGAGCTGGCCAGACTCGCTCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAAGGGCCTGATGGCA
ATCCAGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGATGTGAACGCCGAG
CGCGCGGCAATCGACAGCGGGTTTGACCTGCGTGCCCACTGGTTGCAGTCGCCACATCACGGCAGCCGCACCTCGTCGTC
CAAAGCGTTTCTGCGCGCCGTGGCACCGGTTGGTGTGCTGATTTCCCGTGGTCGCAATAACGCGTTCGGTCACCCGCATC
CGTTGGTCATGGCGCGCTATCGAGGCCTGGACATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.011

97.019

0.602
  comA Ralstonia pseudosolanacearum GMI1000

34.839

100

0.397