Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JJQ97_RS08385 Genome accession   NZ_CP068034
Coordinates   1883662..1884378 (+) Length   238 a.a.
NCBI ID   WP_063613806.1    Uniprot ID   A0AA43IW26
Organism   Pseudomonas syringae strain BIM B-268     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1878662..1889378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ97_RS08365 (JJQ97_08010) - 1878742..1879365 (+) 624 WP_046237665.1 glutathione S-transferase -
  JJQ97_RS08370 (JJQ97_08015) - 1879549..1880481 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  JJQ97_RS08375 (JJQ97_08020) - 1880478..1881266 (+) 789 WP_153221391.1 ABC transporter permease -
  JJQ97_RS08380 (JJQ97_08025) comA 1881403..1883619 (+) 2217 WP_201419704.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JJQ97_RS08385 (JJQ97_08030) exbB 1883662..1884378 (+) 717 WP_063613806.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JJQ97_RS08390 (JJQ97_08035) - 1884375..1884806 (+) 432 WP_201419705.1 biopolymer transporter ExbD -
  JJQ97_RS08395 (JJQ97_08040) lpxK 1884806..1885801 (+) 996 WP_003409586.1 tetraacyldisaccharide 4'-kinase -
  JJQ97_RS08400 (JJQ97_08045) - 1885819..1886004 (+) 186 WP_002552679.1 Trm112 family protein -
  JJQ97_RS08405 (JJQ97_08050) kdsB 1886001..1886765 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JJQ97_RS08410 (JJQ97_08055) murB 1886800..1887819 (+) 1020 WP_201419706.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.38 Da        Isoelectric Point: 7.9113

>NTDB_id=526455 JJQ97_RS08385 WP_063613806.1 1883662..1884378(+) (exbB) [Pseudomonas syringae strain BIM B-268]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDSEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=526455 JJQ97_RS08385 WP_063613806.1 1883662..1884378(+) (exbB) [Pseudomonas syringae strain BIM B-268]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTTGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAGCGAAAAGCTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTGGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGA
AGCCGCTGCGCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGTTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGCTCCGGGGCTACTGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTAGCGATCCCGGCGATCTTCTTTCATCG
CTTTCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTTAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693