Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DMB75_RS11095 Genome accession   NZ_CP068031
Coordinates   2294855..2295364 (-) Length   169 a.a.
NCBI ID   WP_130548194.1    Uniprot ID   -
Organism   Staphylococcus saccharolyticus strain DVP5-16-4677     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2289855..2300364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB75_RS11055 (DMB75_011045) - 2290279..2290902 (+) 624 WP_130548199.1 NDxxF motif lipoprotein -
  DMB75_RS11060 (DMB75_011050) - 2291027..2291422 (+) 396 WP_130559159.1 hypothetical protein -
  DMB75_RS11065 (DMB75_011055) - 2291512..2292090 (-) 579 Protein_2207 histidine phosphatase family protein -
  DMB75_RS11070 (DMB75_011060) - 2292111..2292740 (-) 630 WP_130548198.1 LysE family translocator -
  DMB75_RS11075 (DMB75_011065) - 2293040..2293294 (-) 255 WP_115314045.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DMB75_RS11080 (DMB75_011070) - 2293525..2293785 (+) 261 WP_130548197.1 hypothetical protein -
  DMB75_RS11085 (DMB75_011075) - 2293919..2294176 (+) 258 WP_130548196.1 XRE family transcriptional regulator -
  DMB75_RS12240 - 2294339..2294464 (-) 126 WP_274380095.1 hypothetical protein -
  DMB75_RS11090 (DMB75_011080) rpsR 2294566..2294808 (-) 243 WP_130548195.1 30S ribosomal protein S18 -
  DMB75_RS11095 (DMB75_011085) ssbA 2294855..2295364 (-) 510 WP_130548194.1 single-stranded DNA-binding protein Machinery gene
  DMB75_RS11100 (DMB75_011090) rpsF 2295386..2295682 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  DMB75_RS11105 (DMB75_011095) - 2296091..2296906 (+) 816 WP_130548193.1 GH25 family lysozyme -
  DMB75_RS11110 (DMB75_011100) - 2296979..2297170 (+) 192 WP_130548192.1 hypothetical protein -
  DMB75_RS11115 (DMB75_011105) ychF 2297808..2298905 (-) 1098 WP_130548191.1 redox-regulated ATPase YchF -
  DMB75_RS11120 (DMB75_011110) - 2298917..2299120 (-) 204 WP_130548190.1 DUF951 domain-containing protein -
  DMB75_RS11125 (DMB75_011115) - 2299148..2300023 (-) 876 WP_130548189.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18701.28 Da        Isoelectric Point: 4.7078

>NTDB_id=526413 DMB75_RS11095 WP_130548194.1 2294855..2295364(-) (ssbA) [Staphylococcus saccharolyticus strain DVP5-16-4677]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNMSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=526413 DMB75_RS11095 WP_130548194.1 2294855..2295364(-) (ssbA) [Staphylococcus saccharolyticus strain DVP5-16-4677]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTTATTAACTGTGTTGTCT
TCCGTAGACAAGCAGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTATGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAGCAAGGTGGCCAACGTTCGCAGAACAATAATTTCCAAGACTATGGTCAAGGATTTGGTGGCCAACAATCAGGAC
AAAATATGTCTTATAATAACAATAACTCATCAAACTCTAATCAATCAGATAATCCATTTGCTAACGCTAATGGCCCGATT
GATATTAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.483

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379