Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DMB76_RS11125 Genome accession   NZ_CP068029
Coordinates   2283648..2284157 (-) Length   169 a.a.
NCBI ID   WP_115314060.1    Uniprot ID   A0A380H967
Organism   Staphylococcus saccharolyticus strain 13T0028     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2278648..2289157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB76_RS11090 (DMB76_011095) - 2279000..2279623 (+) 624 WP_115314044.1 NDxxF motif lipoprotein -
  DMB76_RS12095 - 2279713..2280107 (+) 395 Protein_2184 hypothetical protein -
  DMB76_RS11095 (DMB76_011100) - 2280198..2280594 (-) 397 Protein_2185 histidine phosphatase family protein -
  DMB76_RS11100 (DMB76_011105) - 2280615..2281174 (-) 560 Protein_2186 LysE family translocator -
  DMB76_RS11105 (DMB76_011110) - 2281505..2281759 (-) 255 WP_115314045.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  DMB76_RS12100 (DMB76_011115) - 2281989..2282249 (+) 261 WP_115314046.1 hypothetical protein -
  DMB76_RS11110 (DMB76_011120) - 2282383..2282640 (+) 258 WP_115314047.1 XRE family transcriptional regulator -
  DMB76_RS12105 - 2282803..2282976 (-) 174 WP_232619750.1 hypothetical protein -
  DMB76_RS11120 (DMB76_011130) rpsR 2283359..2283601 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  DMB76_RS11125 (DMB76_011135) ssbA 2283648..2284157 (-) 510 WP_115314060.1 single-stranded DNA-binding protein Machinery gene
  DMB76_RS11130 (DMB76_011140) rpsF 2284179..2284475 (-) 297 WP_115314061.1 30S ribosomal protein S6 -
  DMB76_RS11135 (DMB76_011145) - 2284884..2285699 (+) 816 WP_115314062.1 GH25 family lysozyme -
  DMB76_RS11140 (DMB76_011150) - 2285772..2285963 (+) 192 WP_115314063.1 hypothetical protein -
  DMB76_RS11145 (DMB76_011155) ychF 2286609..2287706 (-) 1098 WP_130549560.1 redox-regulated ATPase YchF -
  DMB76_RS11150 (DMB76_011160) - 2287718..2287921 (-) 204 WP_115314065.1 DUF951 domain-containing protein -
  DMB76_RS11155 (DMB76_011165) - 2287949..2288824 (-) 876 WP_115314066.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18697.27 Da        Isoelectric Point: 4.7078

>NTDB_id=526387 DMB76_RS11125 WP_115314060.1 2283648..2284157(-) (ssbA) [Staphylococcus saccharolyticus strain 13T0028]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQLDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=526387 DMB76_RS11125 WP_115314060.1 2283648..2284157(-) (ssbA) [Staphylococcus saccharolyticus strain 13T0028]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTTATTAACTGTGTTGTCT
TCCGTAGACAAGCAGAAAATGTTAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAGGCGGCCAACGTTCGCAGAACAATAATTTCCAAGACTATGGTCAAGGATTTGGTGGCCAACAATCAGGAC
AAAATACGTCTTATAATAACAATAACTCATCAAACTCTAATCAATTAGATAATCCATTTGCTAACGCTAATGGCCCGATT
GATATTAGTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380H967

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379