Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   JKJ11_RS15410 Genome accession   NZ_CP068024
Coordinates   3290780..3291412 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. SCSIO 43133     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3285780..3296412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS15385 (JKJ11_15380) - 3286202..3286798 (-) 597 WP_006074812.1 LysE family translocator -
  JKJ11_RS15390 (JKJ11_15385) - 3286919..3288307 (+) 1389 WP_252038441.1 PLP-dependent aminotransferase family protein -
  JKJ11_RS15395 (JKJ11_15390) - 3288304..3289290 (+) 987 WP_006074814.1 hydrolase -
  JKJ11_RS15400 (JKJ11_15395) - 3289329..3289541 (+) 213 WP_031493588.1 YheU family protein -
  JKJ11_RS15405 (JKJ11_15400) - 3289667..3290536 (+) 870 WP_006074816.1 phosphoribulokinase -
  JKJ11_RS15410 (JKJ11_15405) crp 3290780..3291412 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  JKJ11_RS15415 (JKJ11_15410) - 3291481..3292272 (-) 792 WP_252038443.1 DUF1338 domain-containing protein -
  JKJ11_RS15420 (JKJ11_15415) astD 3292285..3293742 (-) 1458 WP_252038445.1 succinylglutamate-semialdehyde dehydrogenase -
  JKJ11_RS15425 (JKJ11_15420) astA 3293839..3294858 (-) 1020 WP_252038447.1 arginine N-succinyltransferase -
  JKJ11_RS15430 (JKJ11_15425) - 3294932..3296149 (-) 1218 WP_006074821.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=526346 JKJ11_RS15410 WP_004410522.1 3290780..3291412(+) (crp) [Vibrio sp. SCSIO 43133]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=526346 JKJ11_RS15410 WP_004410522.1 3290780..3291412(+) (crp) [Vibrio sp. SCSIO 43133]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACGTTAGAGTGGTTCCTTTCACACTGCCACATTCACAAGTATCCTTCTAA
GAGCACGCTAATCCATGCGGGCGAGAAAGCGGAAACTCTTTACTACATCGTAAAAGGTTCTGTAGCGGTACTGATCAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAACTTGGCTTGTTCGAAGAAGAC
CAAGAACGTACGGCATGGGTACGTGCAAAATCTCCTTGTGAAGTTGCGGAAATCTCATTCAAGAAATTCCGTCAGCTGAT
TCAAGTTAACCCTGATATTCTAATGCGCTTATCTGCTCAAATGGCAAGCCGTCTACAAGTGACTAGCCAAAAAGTAGGTG
ACTTAGCGTTCCTAGACGTAACAGGCCGCATTGCTCAAACGCTACTAAACCTAGCGAAGCAACCAGACGCAATGACTCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGCCAAATTGTTGGCTGTTCACGTGAGACAGTGGGACGCAT
TCTTAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAGACTATTGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467