Detailed information NTG0526204

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: JJL50_RS16960
• Genome accession: NZ_CP067993
• Coordinates: 3647516..3648889 (+)
• Length: 457 a.a.
• NCBI ID: WP_010481514.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain DHHJ
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3642516..3653889

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJL50_RS16945 (JJL50_16945)	sucD	3643371..3644246 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
JJL50_RS16950 (JJL50_16950)	sucC	3644267..3645436 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
JJL50_RS16955 (JJL50_16955)	-	3645842..3647455 (+)	1614	WP_032128821.1	ATP-binding protein	-
JJL50_RS16960 (JJL50_16960)	pilR	3647516..3648889 (+)	1374	WP_010481514.1	sigma-54 dependent transcriptional regulator	Regulator
JJL50_RS16965 (JJL50_16965)	pilB	3649040..3650767 (-)	1728	WP_182266599.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JJL50_RS16970 (JJL50_16970)	-	3651397..3652629 (-)	1233	WP_201117184.1	isoprenylcysteine carboxylmethyltransferase family protein	-
JJL50_RS16975 (JJL50_16975)	-	3652636..3653088 (-)	453	WP_201117186.1	pilin	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49465.77 Da
• Isoelectric Point: 6.5844

>NTDB_id=526204 JJL50_RS16960 WP_010481514.1 3647516..3648889(+) (pilR) [Stenotrophomonas maltophilia strain DHHJ]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPAPGPATEQAARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAHYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRAPGGAAPAEAV
ADLQPGGAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=526204 JJL50_RS16960 WP_010481514.1 3647516..3648889(+) (pilR) [Stenotrophomonas maltophilia strain DHHJ]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACTGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCGTACGACCTGTGCATCA
CCGACATGCGCCTTCCGGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACACCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAACGCCCTGCGCCCGGCCCCGCCA
CCGAACAGGCTGCACGCCTGCTCGGCGCTTCGCCGGCGATGGATGTACTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGCCCAGGGCGCGCG
TGCAGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGTA
AAGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCGGGCCTGTTCCAGGCTGCACACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGTGCGGTCGGTGCGGC
GAATGAGGAGCCGGTGGACGTACGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATTGAACTGAAGGTGCCGCCTCTGCGCGAGCGCCGCCAGGACCTGCCGGAA
CTGGCTGCCGCCGTGCTGGCGCGGCTGGCCCGAAGCCACGGCCGTGCCACACCGCTGCTGGCGCCATCGGCGCTGGAAGC
GCTGGCCCACTATGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATTCTGGAGCGCGCGCTGGCACTGGCCGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCACGCCCCACGTGCGCCCGGCGGCGCTGCTCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCGGTGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACGGCTGCGCAGCTGGGGATTACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.5	99.781	0.624
pilR	Acinetobacter baumannii strain A118	47.732	100	0.484