Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   JJN14_RS08670 Genome accession   NZ_CP067992
Coordinates   1765354..1767312 (-) Length   652 a.a.
NCBI ID   WP_201058439.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760354..1772312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08650 (JJN14_08650) - 1761549..1762232 (-) 684 WP_020901549.1 tyrosine-protein kinase -
  JJN14_RS08655 (JJN14_08655) cpsC 1762242..1762934 (-) 693 WP_201058438.1 capsular polysaccharide biosynthesis protein CpsC -
  JJN14_RS08660 (JJN14_08660) cps4B 1762943..1763674 (-) 732 WP_004263758.1 capsular polysaccharide biosynthesis protein Cps4B -
  JJN14_RS08665 (JJN14_08665) - 1763676..1765121 (-) 1446 WP_004263760.1 LCP family protein -
  JJN14_RS08670 (JJN14_08670) amiA3 1765354..1767312 (-) 1959 WP_201058439.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS08675 (JJN14_08675) - 1767508..1769115 (-) 1608 WP_201058440.1 glycoside hydrolase family 13 protein -
  JJN14_RS08680 (JJN14_08680) - 1769268..1770752 (+) 1485 WP_201058441.1 DUF1846 domain-containing protein -
  JJN14_RS08685 (JJN14_08685) - 1770847..1771329 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72531.59 Da        Isoelectric Point: 4.8402

>NTDB_id=526174 JJN14_RS08670 WP_201058439.1 1765354..1767312(-) (amiA3) [Streptococcus mitis strain S022-V7-A3]
MDTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETAVLNKNFRQAVNFALDRAAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWLGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLELDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKAKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=526174 JJN14_RS08670 WP_201058439.1 1765354..1767312(-) (amiA3) [Streptococcus mitis strain S022-V7-A3]
ATGGATACAAAAAAGCGTGTTCTTAGCGCAGGCCTGACCTTTGCGGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTATCTATTAGACTATTACGCTGATA
ATACAGCCATCATTACCAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGGAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCAAGCGACGGTCTGACTTATACCTATAAATTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAGTACGCTCCAGTCAAGGCGCAAGATTTTGTGACAGGGATCAAGTACGCAGTGGACAATAAATCACAGGCCATTGACT
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTAAAGGCG
ATTGACGACCAGACTGTTGAGTATACTTTGGCACGCCCAGAACCTTACTGGAACTCAAAAACAACCAATAGTATTCTTTT
CCCAGTAAATGAAGAGTTTCTAAATTCAAAAGGGAAAGATTTTGGTACTTTATCTCCAGATAGTATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCGAAATCATCAATCGAGTATGTGAAAAATCCGCATTACTACGATCATGACAAAGTA
TCAATTGAACACGTGAAATTGGCATATTTTGATGGTTCAGACCAAGAATTGACTATCCGTAACTTTGAAAGTGGAGCCTA
TTCGATCGCTGGGGTTTATCCAAATAGTTCAAACTTTGCTAAGACCAAGGAAAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTACTTCAATTTCAACGTCAACCGTAAGGCCTACAATCACACTGCTAAAACGACAGATGAG
CAGAAAAAATCAACTGAGACAGCTGTCTTGAACAAGAACTTCCGTCAAGCGGTGAACTTTGCCTTGGATCGTGCAGCTTA
TTCTGCCCAGTCAAATGGGGAAGAAGCAGCTAGTAAGACCCTTCGTAATACCCTAGTACCTCCTACATTTGTCCAAGTTG
GAGACAAGACCTTTGGAGAAGTAGTCGCTTCTAAATTGGTCAACTATGGCACAGAATGGTTAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTTAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTGGCTGTTGATCAGACAAGTAAAAATGCTGTGACAGGCATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTAGGTGCTGATAACATTGTCATTGATGTTCAGCAACTTTCAACAGATGATTTTAATAACGTAGCC
TTTTTAGCGCCAACGCCAGCTGATCGAGACTACGATTTGAACTTTGATGGCTGGGTAGGTGACTACCAAGATCCGTCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGGTTCTACCTCAAGATTTTTGGTTTAGATGCTCAAGAGGATAAAGCTAAGA
TTGCTAGCTTGGAGCTTGATACCTATACCAAGATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCCATGTCAAGTGGTGGAACAGCTTC
TGTAACCAAAGTGACGCCATTTACAAGAGGCTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTATATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCCAAGGCCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.381

100

0.508
  amiA3 Streptococcus thermophilus LMG 18311

49.924

100

0.503
  amiA Streptococcus salivarius strain HSISS4

49.848

100

0.502