Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   JJN14_RS08595 Genome accession   NZ_CP067992
Coordinates   1748400..1750379 (-) Length   659 a.a.
NCBI ID   WP_201058431.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743400..1755379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08595 (JJN14_08595) amiA3 1748400..1750379 (-) 1980 WP_201058431.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS08600 (JJN14_08600) - 1750578..1751630 (-) 1053 WP_201058432.1 sugar transferase -
  JJN14_RS08605 (JJN14_08605) glf 1751655..1752752 (-) 1098 WP_120718981.1 UDP-galactopyranose mutase -
  JJN14_RS08610 (JJN14_08610) - 1752754..1754178 (-) 1425 WP_201058433.1 flippase -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72975.64 Da        Isoelectric Point: 4.7769

>NTDB_id=526173 JJN14_RS08595 WP_201058431.1 1748400..1750379(-) (amiA3) [Streptococcus mitis strain S022-V7-A3]
MKTRKVLALAGVTLLAAGVLVACSGGSATKGEQTFAFTYETDPDNLNYLTTSKAATSNITSNVIDGLLENDRYGNLVPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSQALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSLVAKSSVEFAKNPNYWDK
DNVHVDKIKLSFWDGQDTSKPAENFKDGSLTAARLYPTSASFAELEKTMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVQFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGADNVVIDIQQLQKDEVL
NITYFAETAAGEDWDISDNVGWTPDFADPSTYLDIIKPSVGENTKTYLGFDSGTDNAAAKKVGLNDYEKLVIEAGNETID
VAKRYDKYAVAQAWLTDSALIIPTTSLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTADEYQKAQDKWM
REKEESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=526173 JJN14_RS08595 WP_201058431.1 1748400..1750379(-) (amiA3) [Streptococcus mitis strain S022-V7-A3]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGTGGCTTGTTCTGGTGGTTC
TGCTACTAAAGGTGAGCAGACCTTCGCCTTTACCTACGAGACAGACCCAGATAATCTCAACTATTTGACAACCAGCAAGG
CAGCTACTTCAAACATTACTAGTAACGTCATTGATGGATTGCTTGAAAATGACCGTTATGGGAATCTTGTTCCCTCTATG
GCAGAGGACTGGTCAGTTTCTAAAGATGGTTTGACCTACACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCTGA
AGGTGAAGAATATGCTCCTGTCAAGGCTCAAGACTTTGTAACAGGTCTTAAATATGCAACAGATAAGAAATCACAAGCTC
TTTACTTGGTACAAGATTCAATCAAGGGTCTGGATGCTTATGCTAAAGGGGAAAATAAAGATTTTTCTCAAGTTGGAATT
AAAGCCCTTGACGATCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACAATGGGTGT
CTTGGCACCAGTTAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCTAAAGCGACAGATCCAAGCAGTATCTTGT
ATAATGGTCCTTATTTGTTAAAATCTCTTGTGGCTAAATCTTCCGTTGAATTTGCAAAAAACCCTAACTACTGGGATAAG
GATAATGTTCATGTTGATAAGATAAAATTGTCATTCTGGGATGGTCAAGATACCAGCAAACCTGCAGAAAACTTTAAAGA
TGGTAGCCTTACAGCAGCCCGCCTCTATCCAACAAGTGCAAGTTTCGCAGAACTTGAAAAAACGATGAAGGACAATATTG
TCTATACCCAACAAGACTCTACGACTTATCTAGTTGGTACAAATATTGACCGCCAGTCTTACAAATATACTTCTAAGACT
AGTGACGAACAAAAGACCTCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGCCAAGCTATTGCTTTTGGTTTTGATCG
TACGGCCTATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATTTTGCGTAATCTTTTTGTACCACCAACATTTG
TCCAAGCAGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTGGTGACTTATGGGGATGAATGGAAGGATGTGAAC
CTTGCTGATGCCCAAGATGGACTATATAATCCTGAAAAAGCCAAGGCAGAATTTGCTAAAGCTAAGTCAGCTCTACAAGC
TGAGGGAGTACAATTCCCAATTCACCTAGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTACAGTCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTGCAGATAATGTCGTAATTGATATTCAACAACTACAAAAAGATGAAGTCTTG
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTTGGTTGGACTCCAGACTTTGC
GGATCCATCTACTTACCTCGATATTATCAAACCATCAGTTGGTGAAAACACTAAAACCTACCTTGGCTTTGATTCTGGTA
CAGATAATGCTGCAGCTAAGAAGGTTGGTCTAAACGACTATGAGAAATTGGTAATTGAAGCTGGAAACGAGACAATAGAT
GTAGCAAAACGTTATGATAAGTATGCTGTAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATTCCAACAACATCACT
CACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCGTTTGCCTTCTCTGGTAACAAGGGGACAAGCGATC
CGCTCCTTTACAAATACTTGGAACTTCAAGACAAGGCAGTTACTGCTGATGAATACCAAAAAGCTCAAGATAAATGGATG
AGAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGAACTCGCAAAACATGTGAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.394

100

0.595
  amiA Streptococcus salivarius strain HSISS4

59.242

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.788

100

0.589