Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JJN14_RS03455 Genome accession   NZ_CP067992
Coordinates   689185..691143 (+) Length   652 a.a.
NCBI ID   WP_201058917.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 684185..696143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS03430 (JJN14_03430) - 684323..684835 (+) 513 WP_201058913.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  JJN14_RS03435 (JJN14_03435) - 684819..685469 (+) 651 WP_201058914.1 DUF1803 domain-containing protein -
  JJN14_RS03440 (JJN14_03440) - 685571..685762 (+) 192 WP_049488510.1 CsbD family protein -
  JJN14_RS03445 (JJN14_03445) - 685807..687252 (-) 1446 WP_201058915.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  JJN14_RS03450 (JJN14_03450) - 687358..688980 (+) 1623 WP_201058916.1 putative polysaccharide biosynthesis protein -
  JJN14_RS03455 (JJN14_03455) amiA 689185..691143 (+) 1959 WP_201058917.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS03460 (JJN14_03460) - 691285..692379 (+) 1095 WP_201058918.1 cystathionine gamma-synthase -
  JJN14_RS03465 (JJN14_03465) - 692387..693553 (+) 1167 WP_201058919.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72724.19 Da        Isoelectric Point: 4.9557

>NTDB_id=526149 JJN14_RS03455 WP_201058917.1 689185..691143(+) (amiA) [Streptococcus mitis strain S022-V7-A3]
MKKSKAKYATLAGVVLSAGILLSACGNSSTASKTYNYVYVSDPSSLNYLAENRATTNDIVVNLVDGLMENDQYGNYIPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGDEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYITGKTTDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKNKDNIIYSLQDTTSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAAKKGVQEANSMKQSIEAALGAENVVIDIQQLTTEDYDN
TSYLAQTAAQKDYDLYNGGWGSDYQDPSTYLDIFNVKSGGVLQNLGIEPGEANDKAKAVGLDIYTQMLEEANKEQDLAKR
YEKYAEIQAWLVDSALAIPNISKGGTPVLRKTVPFSEPYSLAGNKGIESYKYLKVQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=526149 JJN14_RS03455 WP_201058917.1 689185..691143(+) (amiA) [Streptococcus mitis strain S022-V7-A3]
ATGAAAAAGTCTAAAGCCAAGTATGCAACGCTTGCAGGTGTCGTATTAAGTGCAGGTATTTTATTAAGCGCGTGTGGAAA
TTCCAGCACAGCGTCAAAAACATATAACTATGTTTATGTTAGTGATCCGTCTAGTTTGAATTATCTAGCAGAAAACCGTG
CAACAACTAATGATATCGTGGTTAATTTGGTAGATGGACTCATGGAAAATGACCAGTATGGAAACTATATTCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTACGTAAAGATGCTAAATGGTATACTGCAGA
TGGAGATGAATATGCTCCTGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTACTTGGTGCAAGAATCCGTTGCTGGTTTAGATGACTATATCACTGGTAAAACAACAGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACGGTTCAATATACCTTGACACGACCAGAATCTTACTGGAACTCAAAAACAACTTCAACCAT
TCTCTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATCGAATTCAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTGGCTCGTAACTTTGTAGAAGG
TGCTTATAGCTATGCTCGTCTTTATCCAAATAGTTCAAGTTTTGAAGGAATTAAAGAAAAGAATAAGGACAATATCATCT
ATAGCTTGCAAGATACTACTTCTTACTTCTTAAACTTTAACCTAGATAGAAAATCTTATAAATTCACTTCAAAAACAAGT
GATGCTGAGAAGAAATCGACTCAAGAAGCGGTTCTTAACAAAAACTTCCGTCAAGCCATCAACTTTGCATATGATCGTAC
AGCTTACGGGGCTCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTTGTAA
GTATCAACGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAAGATCCATACTACAATGCTGAAAAAGCCAAGGCTAAATTTGCAGAGGCTAAGAAAGAACTCCAAGCTAA
AGGAGTTCAATTCCCTATCCACTTGGACATGACAGTTGACCAAGCTGCTAAAAAGGGTGTCCAAGAGGCAAATTCTATGA
AGCAATCTATTGAAGCAGCCTTAGGTGCAGAGAACGTTGTAATTGATATTCAACAACTCACTACTGAAGATTATGACAAT
ACAAGCTATTTGGCTCAGACTGCTGCTCAGAAAGATTACGATCTATATAACGGTGGTTGGGGATCTGACTATCAAGATCC
ATCAACTTATCTTGATATTTTCAATGTGAAGAGCGGTGGAGTGTTGCAAAATCTGGGTATAGAGCCTGGTGAAGCTAATG
ATAAGGCTAAGGCTGTTGGACTGGATATCTACACTCAAATGCTGGAAGAAGCCAATAAGGAGCAAGATCTTGCAAAACGC
TATGAAAAGTATGCTGAGATCCAAGCATGGTTGGTAGACAGCGCTTTAGCGATTCCAAATATTTCTAAGGGGGGAACACC
AGTATTGAGAAAAACAGTTCCTTTCTCAGAACCATATTCATTAGCAGGTAATAAAGGAATCGAATCCTATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGACGAATATGAAAAAGCCAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.295

100

0.578
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.842

100

0.564