Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   JJN14_RS01170 Genome accession   NZ_CP067992
Coordinates   246663..248627 (+) Length   654 a.a.
NCBI ID   WP_201058693.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 241663..253627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS01145 (JJN14_01145) - 242409..243797 (+) 1389 WP_201058692.1 Cof-type HAD-IIB family hydrolase -
  JJN14_RS01150 (JJN14_01150) - 243854..244306 (-) 453 WP_004260486.1 universal stress protein -
  JJN14_RS01155 (JJN14_01155) - 244470..244769 (+) 300 WP_120770873.1 hypothetical protein -
  JJN14_RS01160 (JJN14_01160) - 245032..246246 (+) 1215 WP_000666455.1 pyridoxal phosphate-dependent aminotransferase -
  JJN14_RS01165 (JJN14_01165) rpmH 246391..246525 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  JJN14_RS01170 (JJN14_01170) amiA 246663..248627 (+) 1965 WP_201058693.1 peptide ABC transporter substrate-binding protein Regulator
  JJN14_RS01175 (JJN14_01175) - 248962..250806 (-) 1845 WP_201058694.1 APC family permease -
  JJN14_RS01180 (JJN14_01180) - 251106..251438 (-) 333 WP_075232265.1 helix-turn-helix domain-containing protein -
  JJN14_RS01185 (JJN14_01185) - 251591..252544 (+) 954 WP_201058695.1 hypothetical protein -
  JJN14_RS01190 (JJN14_01190) - 252741..253166 (+) 426 WP_075232263.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 73008.09 Da        Isoelectric Point: 4.6854

>NTDB_id=526134 JJN14_RS01170 WP_201058693.1 246663..248627(+) (amiA) [Streptococcus mitis strain S022-V7-A3]
MKKSKVMLFGAMALTAGLALAACGSSQSSNADKTYSYIFVSNPDTLDYITSTRDSTSSITTNLIDGLLENDQYGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKSSDFGTVGV
KAVDDYTLQYTLNQPETYWNSKTTASILSPVNEAFLKSQGDDFGSVTPSSILSNGPYLFKSFTSKSLIELDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSIARGFLDGNYTDGRIFPTSSVFAELKKGNEDKITYTPQNSVTFYYLFNVNRQSYKQTMKQS
DKEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEEGADRILRNTVTPSDFVQVGDKNFGDIVNEKIVNYGKDWANINL
NDGKQAFLNPEKAKEKFAKAKESLQAQGVTFPIHLDMPVDQTAKLDVQQAGSFKQTVEETLGKENVVIDVIQLSPDEKDQ
ATYFADTAEQKDYDIDISGWGGDYSDPKTYLAILDPETGSQLKNMGLSEGKDKEVKDKIGLADYKKLLDQADAEITDTQA
RYEKYAEAQAWLTDSALFLPVQSGGANPIFRKSVPFTGPFSFVGHKGNADNYKYVELQKEPVTAKQYQELYEKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=526134 JJN14_RS01170 WP_201058693.1 246663..248627(+) (amiA) [Streptococcus mitis strain S022-V7-A3]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTATGGCTTTGACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCAAGTAATGCAGACAAGACTTACTCTTATATCTTTGTCAGCAACCCTGATACCTTGGATTATATTACCTCTACACGAG
ATTCTACATCTAGTATCACAACCAACTTGATTGATGGGTTGTTGGAAAATGACCAGTATGGCAATCTCATCCCCTCTATG
GCTGAGTCATGGACAGTGTCAAAAGATGGCTTGACTTACACTTATAAGATCCGTCAGGGAGCTAAATGGTACACTTCTGA
AGGAGAAGAGTATGCGGACGTAACAGCTCATGACTTTGTGACTGGTCTCAAGTATGCGGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTACAAGACTCTATCAAGGGACTAGCAGACTATGTTGAAGGGAAATCATCTGATTTTGGAACTGTTGGTGTT
AAGGCAGTGGATGATTACACTCTACAATACACTCTCAACCAACCTGAGACTTATTGGAACTCTAAAACAACAGCAAGTAT
CCTTAGTCCTGTAAATGAAGCCTTCTTGAAGTCTCAGGGAGATGACTTTGGAAGTGTGACACCATCAAGTATCTTGTCAA
ATGGTCCTTACTTATTTAAATCATTCACATCCAAATCTTTGATTGAACTTGACAAAAACCCTAATTACTGGGATAAGGAC
AATGTTAAAATCGAGAAAGTGAAACTCTCTTTCTTTGACGGTTCTGACCAAGACAGCATTGCCAGAGGTTTCTTGGATGG
TAATTATACAGATGGTCGTATCTTCCCAACAAGTTCAGTATTTGCTGAACTCAAGAAGGGCAATGAGGACAAGATTACCT
ATACACCACAAAACTCAGTTACTTTCTATTATCTTTTCAACGTCAATCGTCAAAGCTACAAGCAGACTATGAAACAGTCT
GATAAGGAAAAGACAGATTCACGCGCAGCTATGCAAAATAAAGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCACAGACAAATGGTGAAGAAGGAGCAGACCGTATCTTGCGTAATACGGTTACACCAAGTGACTTTGTCC
AAGTTGGTGATAAGAACTTCGGTGACATTGTCAATGAGAAAATTGTCAACTACGGTAAAGATTGGGCAAATATCAATCTA
AACGATGGTAAGCAAGCCTTCTTGAATCCTGAAAAGGCCAAAGAGAAGTTTGCCAAGGCCAAAGAAAGTCTGCAAGCACA
GGGAGTAACTTTCCCAATTCATTTGGATATGCCAGTTGACCAGACTGCTAAATTAGATGTGCAACAGGCCGGCTCTTTCA
AACAAACAGTGGAAGAAACCCTTGGTAAGGAGAATGTGGTCATCGATGTTATCCAACTTTCTCCAGATGAAAAAGACCAA
GCAACCTACTTTGCAGATACAGCAGAACAAAAAGACTACGATATCGACATCTCAGGATGGGGTGGAGACTACTCAGATCC
TAAGACTTACCTAGCGATTCTAGACCCAGAGACAGGTTCTCAGTTGAAAAATATGGGCTTGTCTGAAGGAAAAGACAAGG
AAGTCAAGGATAAGATTGGTCTTGCTGACTACAAGAAACTCTTGGATCAGGCTGATGCGGAAATCACAGATACTCAAGCT
CGCTATGAAAAATATGCTGAAGCCCAAGCTTGGTTGACAGATAGTGCCCTCTTCCTACCAGTTCAAAGTGGTGGAGCCAA
CCCAATCTTCCGTAAGAGTGTACCGTTTACAGGTCCATTCTCATTCGTTGGTCATAAAGGAAATGCGGACAACTACAAAT
ATGTTGAATTGCAAAAAGAGCCAGTCACTGCTAAACAGTATCAAGAACTCTATGAAAAATGGCTGAAAGAAAAAGCTGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAACCACATTCAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.558
  amiA3 Streptococcus thermophilus LMD-9

55.167

100

0.555
  amiA3 Streptococcus thermophilus LMG 18311

54.863

100

0.552