Detailed information NTG0526028

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JJL53_RS20280
• Genome accession: NZ_CP067417
• Coordinates: 4373836..4374708 (+)
• Length: 290 a.a.
• NCBI ID: WP_005332122.1
• Uniprot ID: -
• Organism: Aeromonas media strain E31
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4368836..4379708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJL53_RS20260 (JJL53_20260)	-	4369042..4370178 (+)	1137	WP_041204891.1	ISAs1-like element ISAeme1 family transposase	-
JJL53_RS25195 (JJL53_20265)	-	4370224..4370637 (+)	414	WP_081805615.1	hypothetical protein	-
JJL53_RS20270 (JJL53_20270)	pilB	4370678..4372384 (+)	1707	WP_139751891.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
JJL53_RS20275 (JJL53_20275)	pilC	4372514..4373755 (+)	1242	WP_041204905.1	type II secretion system F family protein	Machinery gene
JJL53_RS20280 (JJL53_20280)	pilD	4373836..4374708 (+)	873	WP_005332122.1	prepilin peptidase	Machinery gene
JJL53_RS20285 (JJL53_20285)	coaE	4374727..4375341 (+)	615	WP_005332121.1	dephospho-CoA kinase	-
JJL53_RS20290 (JJL53_20290)	zapD	4375379..4376101 (+)	723	WP_005332120.1	cell division protein ZapD	-
JJL53_RS20295 (JJL53_20295)	yacG	4376111..4376305 (+)	195	WP_005332119.1	DNA gyrase inhibitor YacG	-
JJL53_RS20300 (JJL53_20300)	mutT	4376381..4376785 (-)	405	WP_005332118.1	8-oxo-dGTP diphosphatase MutT	-
JJL53_RS20305 (JJL53_20305)	secA	4376941..4379661 (-)	2721	WP_005332117.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32098.35 Da
• Isoelectric Point: 7.0918

>NTDB_id=526028 JJL53_RS20280 WP_005332122.1 4373836..4374708(+) (pilD) [Aeromonas media strain E31]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKTPISARYPLVELLTALLSVTVAATLTPGWGALAALTLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=526028 JJL53_RS20280 WP_005332122.1 4373836..4374708(+) (pilD) [Aeromonas media strain E31]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTCCTCAATGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCACGCAGACTACCGTGACTACTTCG
GCAGCGAAGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTGCCGCGCTCTCGCTGCCCACACTGCGATCACCCC
ATAAGCGCGCTGGAAAACATCCCCCTGTTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGACGCCCATCTC
GGCCCGCTACCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACTCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCACACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGAATGGGTCATG
GCGACTTCAAGCTGCTAGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATCGTGTTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGAATCGGGCTTATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCCTTTGGTCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.158	95.862	0.5
pilD	Acinetobacter baumannii D1279779	51.799	95.862	0.497
pilD	Neisseria gonorrhoeae MS11	49.81	90.69	0.452