Detailed information NTG0525935

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JJN09_RS17085
• Genome accession: NZ_CP067412
• Coordinates: 3793737..3795980 (+)
• Length: 747 a.a.
• NCBI ID: WP_249482766.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HS6
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3788737..3800980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJN09_RS17060 (JJN09_17035)	-	3789843..3790502 (+)	660	WP_249482758.1	transglutaminase family protein	-
JJN09_RS17065 (JJN09_17040)	-	3790546..3791169 (+)	624	WP_249482760.1	glutathione S-transferase family protein	-
JJN09_RS17070 (JJN09_17045)	-	3791302..3792234 (+)	933	WP_249482761.1	ABC transporter ATP-binding protein	-
JJN09_RS17075 (JJN09_17050)	-	3792231..3793010 (+)	780	WP_249482763.1	ABC transporter permease	-
JJN09_RS17080 (JJN09_17055)	-	3793064..3793582 (-)	519	WP_249482765.1	DUF2062 domain-containing protein	-
JJN09_RS17085 (JJN09_17060)	comA	3793737..3795980 (+)	2244	WP_249482766.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JJN09_RS17090 (JJN09_17065)	exbB	3796070..3796705 (+)	636	WP_162803842.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JJN09_RS17095 (JJN09_17070)	-	3796702..3797130 (+)	429	WP_007950767.1	biopolymer transporter ExbD	-
JJN09_RS17100 (JJN09_17075)	lpxK	3797130..3798140 (+)	1011	WP_249482767.1	tetraacyldisaccharide 4'-kinase	-
JJN09_RS17105 (JJN09_17080)	-	3798165..3798350 (+)	186	WP_003174668.1	Trm112 family protein	-
JJN09_RS17110 (JJN09_17085)	kdsB	3798347..3799111 (+)	765	WP_249482769.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JJN09_RS17115 (JJN09_17090)	-	3799111..3799575 (+)	465	WP_249482771.1	low molecular weight protein-tyrosine-phosphatase	-
JJN09_RS17120 (JJN09_17095)	murB	3799572..3800591 (+)	1020	WP_249482772.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 81928.16 Da
• Isoelectric Point: 10.2021

>NTDB_id=525935 JJN09_RS17085 WP_249482766.1 3793737..3795980(+) (comA) [Pseudomonas sp. HS6]
MRTGMMALAVGLLVPVFLPALPPVGWMVLLPVVALMLLPFRSYPLAFLLFGFTWSCMGAQWALDDRLPSKLDGETRWVEG
RVVGLPQNGDGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRVGATG
TVKDGRRLAAAQWAWRDSIRQRLLEMDTQGRGAALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYGL
VAGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFTAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLILGLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLVDGLFRALALIAGRWPAWVAASMPGWILALGCIGAVLLLLPRGAPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDVGERVVLPALHKLGVERLDLMLLSHADADHAGGA
LAVAKGLPVGRVISGDPPGLPEVLNAETCDSGRQWQWDGVSFHLWQWAGAQDSNQRSCVLQIDANGERLLLTGDIDTAAE
RDLLNSALAVPTHWLQAPHHGSRSSSSMALLKVLQPRDVLISRGQGNSFGHPHPTVIARYRKLGLRIHDSAEHGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide

• Length: 2244 bp

>NTDB_id=525935 JJN09_RS17085 WP_249482766.1 3793737..3795980(+) (comA) [Pseudomonas sp. HS6]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGCGTTGCCGCCGGTCGGGTGGAT
GGTTTTGCTGCCGGTTGTGGCGCTGATGCTGTTGCCGTTTCGCAGCTATCCGCTGGCCTTTTTGCTGTTTGGCTTCACTT
GGTCGTGTATGGGTGCGCAGTGGGCGCTGGATGATCGATTGCCATCGAAGCTTGACGGAGAGACACGCTGGGTCGAAGGG
CGGGTGGTCGGTCTGCCGCAGAATGGCGATGGAGTGGTGCGCTTTGAGCTGGCGGATGCCCGTTCGCGGCACGAGAAACT
GCCATCGCTGATGCGTCTGGCGTGGTACGCCGGGCCACCGGTCAACAGCGGTGAGCGCTGGCGGCTTGCGGTCAAACTCA
AGCGTCCCGGCGGACTGCTCAATCCCGATGCCTTCGATTACGAGGCCTGGCTGTTGGCGCAACGCGTCGGCGCCACCGGC
ACGGTGAAGGACGGCCGTCGGCTGGCGGCGGCGCAATGGGCCTGGCGGGACAGCATCCGTCAGCGTCTGCTGGAAATGGA
TACCCAGGGCCGGGGCGCAGCACTGGCGGCACTGGTGTTGGGCGATGGTTCGGGGCTCAGTCGCGAGGACTGGCAGATCC
TGCAGGACACTGGCACCGTGCATCTGCTGGTGATTTCCGGGCAACACATCGGTCTGTTGGCGGCGGTGATGTATGGGCTG
GTCGCCGGGCTGGCGCGATTCGGCCTGTGGCCATTGCGTTGGCCATGGCTGCCGTGGGCCTGTGGTCTGGCGTTCGCGGC
GGCGCTGGGTTACGGCTTGCTGGCCGGGTTCGATGTGCCGGTGCGACGGGCCTGCGTGATGGTTGCGCTGGTGTTGCTGT
GGCGATTGCGATTTCGCCATCTCGGTGCCTGGTGGCCGTTGTTGCTGGCCTTCAATGGGGTGTTGCTGATGGATCCGCTG
GCCAGTCTGCGCCCGGGGTTGTGGTTGTCTTTCACAGCAGTGGCGGTGTTGATTTTCACGTTCGGCGGTCGTCTAGGGCC
CTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGTTGATCGCAATCGGTCTGTGCCCGGTGTTGCTGATTCTGGGAT
TACCGATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTTTTGCGGTACTCCCGCCGGCGTTG
CTTGGCACGTTGTTGCTGCCGATTCCCTATGTCGGCGAAGGTCTATTGTGGCTGGCCGGCGGGCTGGTCGATGGATTGTT
CCGAGCTCTGGCCCTGATTGCCGGGCGTTGGCCGGCATGGGTTGCGGCATCGATGCCGGGTTGGATACTGGCGCTGGGCT
GCATCGGTGCCGTGCTGTTATTACTGCCCCGAGGCGCTCCGTTGCGTCCCTTGGGCTGGCCGTTGCTGCTGGTGCTGGCA
TTTCCTCCCCGGGAGCGGCTGGCCGAAGGCGTGGCGGATGTCTGGCAGCTCGACGTCGGCCAGGGGCTGGCGATTCTGAT
CCGCACTCGCCATCACACATTGCTGTACGACAGTGGCCCGCGCTTCGGTGACTTCGACGTCGGTGAGCGGGTGGTGCTGC
CGGCCTTGCACAAGCTGGGCGTTGAGCGACTCGACCTGATGCTGCTCAGCCATGCTGACGCTGACCATGCCGGTGGGGCG
TTGGCCGTGGCAAAGGGCTTGCCGGTCGGTCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCTGAAGTGCTGAACGCCGA
GACCTGTGACAGCGGTCGGCAATGGCAGTGGGATGGTGTTTCCTTTCATCTATGGCAATGGGCTGGTGCCCAGGACAGCA
ACCAGCGCTCCTGTGTCCTGCAGATCGACGCCAACGGTGAACGTTTGCTGCTGACCGGCGATATCGACACCGCTGCCGAA
CGGGATCTGCTCAACAGCGCGTTGGCGGTTCCGACTCATTGGCTGCAAGCCCCACACCATGGCAGTCGCAGTTCCTCATC
GATGGCGTTGCTCAAGGTTTTGCAGCCCCGGGACGTGCTGATTTCCCGGGGTCAGGGCAACTCGTTCGGGCATCCGCATC
CGACGGTCATCGCCCGTTACCGCAAGCTGGGTCTGCGCATCCACGACAGCGCTGAGCACGGTGCCATTCATCTGCAACTG
GGCAGATTCCAGCCGGCCCGGTCGATGCGTCAGCAACGCCGGTTCTGGCGCGACCCGCCGTTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.17	96.252	0.598
comA	Ralstonia pseudosolanacearum GMI1000	34.293	100	0.367