Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JJN09_RS17090 Genome accession   NZ_CP067412
Coordinates   3796070..3796705 (+) Length   211 a.a.
NCBI ID   WP_162803842.1    Uniprot ID   -
Organism   Pseudomonas sp. HS6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791070..3801705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN09_RS17070 (JJN09_17045) - 3791302..3792234 (+) 933 WP_249482761.1 ABC transporter ATP-binding protein -
  JJN09_RS17075 (JJN09_17050) - 3792231..3793010 (+) 780 WP_249482763.1 ABC transporter permease -
  JJN09_RS17080 (JJN09_17055) - 3793064..3793582 (-) 519 WP_249482765.1 DUF2062 domain-containing protein -
  JJN09_RS17085 (JJN09_17060) comA 3793737..3795980 (+) 2244 WP_249482766.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JJN09_RS17090 (JJN09_17065) exbB 3796070..3796705 (+) 636 WP_162803842.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JJN09_RS17095 (JJN09_17070) - 3796702..3797130 (+) 429 WP_007950767.1 biopolymer transporter ExbD -
  JJN09_RS17100 (JJN09_17075) lpxK 3797130..3798140 (+) 1011 WP_249482767.1 tetraacyldisaccharide 4'-kinase -
  JJN09_RS17105 (JJN09_17080) - 3798165..3798350 (+) 186 WP_003174668.1 Trm112 family protein -
  JJN09_RS17110 (JJN09_17085) kdsB 3798347..3799111 (+) 765 WP_249482769.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JJN09_RS17115 (JJN09_17090) - 3799111..3799575 (+) 465 WP_249482771.1 low molecular weight protein-tyrosine-phosphatase -
  JJN09_RS17120 (JJN09_17095) murB 3799572..3800591 (+) 1020 WP_249482772.1 UDP-N-acetylmuramate dehydrogenase -
  JJN09_RS17125 (JJN09_17100) - 3800838..3801308 (+) 471 WP_096820949.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.96 Da        Isoelectric Point: 7.3615

>NTDB_id=525936 JJN09_RS17090 WP_162803842.1 3796070..3796705(+) (exbB) [Pseudomonas sp. HS6]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=525936 JJN09_RS17090 WP_162803842.1 3796070..3796705(+) (exbB) [Pseudomonas sp. HS6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCTGGCCTGGCCAAC
TCTAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATCGCCGCGATGTCGCCGTTGCTGGGGCTGTTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTATTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848