Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JHW41_RS05625 Genome accession   NZ_CP067396
Coordinates   1302039..1303457 (-) Length   472 a.a.
NCBI ID   WP_250449292.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297039..1308457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW41_RS05605 (JHW41_05575) pilB 1297429..1299156 (-) 1728 WP_250449290.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JHW41_RS05610 (JHW41_05580) - 1299234..1300940 (-) 1707 WP_250449291.1 phosphoethanolamine transferase -
  JHW41_RS05615 (JHW41_05585) - 1300999..1301439 (-) 441 WP_284499531.1 pilin -
  JHW41_RS05625 (JHW41_05590) pilR 1302039..1303457 (-) 1419 WP_250449292.1 sigma-54 dependent transcriptional regulator Regulator
  JHW41_RS05630 (JHW41_05595) - 1303556..1305181 (-) 1626 WP_057948793.1 ATP-binding protein -
  JHW41_RS05635 (JHW41_05600) sucC 1305538..1306704 (+) 1167 WP_057948792.1 ADP-forming succinate--CoA ligase subunit beta -
  JHW41_RS05640 (JHW41_05605) sucD 1306871..1307746 (+) 876 WP_057948791.1 succinate--CoA ligase subunit alpha -
  JHW41_RS05645 (JHW41_05610) - 1307868..1308158 (+) 291 WP_078998154.1 hypothetical protein -
  JHW41_RS05650 (JHW41_05615) - 1308155..1308451 (+) 297 WP_250449293.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50955.48 Da        Isoelectric Point: 7.1658

>NTDB_id=525864 JHW41_RS05625 WP_250449292.1 1302039..1303457(-) (pilR) [Lysobacter enzymogenes strain CX06]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLNEARSQLLRNRYDLCLTDMRLPDGSGMDLVAEISQKHPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLSVLRDLVRHALELHETRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLAMQVKLLRAIQEKSIRPVGAQAEVTVDVRILSATHKDLAALVAEGRFRQDLYYRINVIELRVPPLRERLDDLPGLAA
KILHRLAGNQGRPVPRLGDDALEALRAYNFPGNVRELENILERALALAEGEVLSAGDLRLPRLATQAPPGAVAPGAAPPP
AGQPVPPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=525864 JHW41_RS05625 WP_250449292.1 1302039..1303457(-) (pilR) [Lysobacter enzymogenes strain CX06]
ATGGCTGAAACCCGTAGTGCATTGGTAGTCGACGACGAACGCGACATCCGCGAGTTGCTCGTCATGACGTTGGGCCGCAT
GGGCCTGCGTTGCGATACCGCGTCGGGCCTCAACGAGGCCCGCAGCCAGCTGCTGCGCAATCGTTACGATCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGCATCCCAACACTCCGGTGGCG
ATGATCACCGCCTTCGGCAACGTCGAGGCCGCGGTGGAAGCGCTCAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCGGT
CGACTTGTCGGTGCTGCGCGACCTGGTGCGCCACGCGCTGGAGCTGCACGAGACCCGCCGCAGCGCCAGCGAGGCGGTCG
GCTCGCGCCTGTACGGCGAATCGCCGGCGATGATCAAGCTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCG
GTGTACATCGCAGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCATTCCGAGGGCGGCCGCGCCGACGG
CCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCGGGCCTGTTCCAGGCCGCCGATGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGTCCGGTCGGCGCCCAAGCCGAGGT
CACGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGCGCTGGTCGCCGAAGGCCGCTTCCGCCAGGACC
TGTACTACCGCATCAACGTCATCGAGTTGCGCGTGCCGCCGCTGCGCGAGCGCCTGGACGACCTGCCCGGCCTGGCCGCG
AAGATCCTCCACCGCCTGGCCGGCAACCAGGGCCGGCCGGTGCCGCGACTGGGCGACGACGCGCTCGAGGCGCTGCGCGC
CTACAACTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCGCTGGCCCTGGCCGAAGGCGAAGTCCTCA
GCGCCGGCGACCTGCGCCTGCCGCGCCTGGCCACCCAGGCCCCGCCGGGCGCCGTCGCCCCCGGCGCCGCCCCGCCGCCC
GCCGGCCAGCCCGTGCCCCCGGGCGCGGTCGACCCGCGCACGCTCAACCCGCGCGACACCGCCACCAGCGCCCTGCCGTC
CTACATCGAAGAGATCGAACGCGCCGCCATCCAACAGGCGCTGCAGGAGAACCGCTACAACAAGACCCGCACCGCGGCCG
CGCTGGGCATTACGTTCCGGGCGCTGCGCTATAAGCTGAAGAAGCTCGGGATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(429-469)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.539

99.364

0.631
  pilR Acinetobacter baumannii strain A118

47.908

100

0.485