Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JHE06_RS00040 Genome accession   NZ_CP067364
Coordinates   9499..10017 (+) Length   172 a.a.
NCBI ID   WP_058919574.1    Uniprot ID   -
Organism   Carnobacterium sp. CS13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4499..15017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHE06_RS00030 (JHE06_00030) gyrA 6354..8921 (+) 2568 WP_058919572.1 DNA gyrase subunit A -
  JHE06_RS00035 (JHE06_00035) rpsF 9151..9450 (+) 300 WP_058919573.1 30S ribosomal protein S6 -
  JHE06_RS00040 (JHE06_00040) ssb 9499..10017 (+) 519 WP_058919574.1 single-stranded DNA-binding protein Machinery gene
  JHE06_RS00045 (JHE06_00045) rpsR 10055..10291 (+) 237 WP_058919575.1 30S ribosomal protein S18 -
  JHE06_RS00050 (JHE06_00050) - 10680..12677 (+) 1998 WP_058919576.1 DHH family phosphoesterase -
  JHE06_RS00055 (JHE06_00055) rplI 12680..13132 (+) 453 WP_058919577.1 50S ribosomal protein L9 -
  JHE06_RS00060 (JHE06_00060) dnaB 13356..14738 (+) 1383 WP_058919578.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19101.81 Da        Isoelectric Point: 5.2596

>NTDB_id=525600 JHE06_RS00040 WP_058919574.1 9499..10017(+) (ssb) [Carnobacterium sp. CS13]
MINNVVLVGRLTKDADLRYTSNGTAVASFTVAVNRQFTNQKGERDADFINCVAWRKTAETLANFTRKGSLVGVEGRIQTR
SYDNQQGQRVYVTEVVVDTFSMLESKTTTEQRRGSDTNHSGAAPQQNSSNQTQNNYSQKSAPTDSKYPDFGNSDPFEKSS
QPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=525600 JHE06_RS00040 WP_058919574.1 9499..10017(+) (ssb) [Carnobacterium sp. CS13]
GTGATTAATAATGTTGTTTTAGTTGGAAGATTAACTAAAGACGCGGATTTAAGATACACTTCGAACGGTACAGCTGTGGC
TTCATTCACCGTGGCTGTAAACAGACAGTTTACAAACCAAAAAGGTGAACGGGATGCGGATTTTATTAACTGTGTTGCTT
GGAGAAAGACAGCTGAAACATTGGCTAACTTTACTCGTAAAGGGTCATTAGTTGGTGTGGAAGGACGTATTCAAACGCGT
TCTTATGATAACCAACAAGGACAACGAGTGTACGTTACTGAAGTTGTTGTAGACACTTTCTCAATGTTAGAATCAAAAAC
GACAACAGAACAACGTCGTGGATCTGATACGAATCATTCAGGAGCTGCTCCTCAACAAAATTCATCTAACCAAACACAAA
ATAATTATTCACAAAAATCAGCTCCGACAGATTCGAAATATCCAGATTTTGGAAACTCTGATCCTTTTGAAAAGAGCAGC
CAACCGATAGATATTTCGGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

61.628

0.39