Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JJC01_RS17025 Genome accession   NZ_CP067345
Coordinates   3664328..3665035 (-) Length   235 a.a.
NCBI ID   WP_227831313.1    Uniprot ID   -
Organism   Clostridioides sp. ES-S-0010-02     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659328..3670035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJC01_RS17005 (JJC01_16965) - 3660056..3660499 (-) 444 WP_227831311.1 DUF3788 family protein -
  JJC01_RS17010 (JJC01_16970) - 3660552..3661019 (-) 468 WP_227834752.1 VOC family protein -
  JJC01_RS17015 (JJC01_16975) - 3661551..3661922 (-) 372 WP_227483037.1 BlaI/MecI/CopY family transcriptional regulator -
  JJC01_RS17020 (JJC01_16980) - 3662882..3664288 (-) 1407 WP_227834753.1 sensor histidine kinase -
  JJC01_RS17025 (JJC01_16985) scnR 3664328..3665035 (-) 708 WP_227831313.1 response regulator transcription factor Regulator
  JJC01_RS17030 (JJC01_16990) - 3665229..3666143 (+) 915 WP_227433510.1 ABC transporter ATP-binding protein -
  JJC01_RS17035 (JJC01_16995) - 3666143..3666904 (+) 762 WP_227483040.1 ABC transporter permease -
  JJC01_RS17040 (JJC01_17000) - 3666916..3667653 (+) 738 WP_227831315.1 ABC transporter permease -
  JJC01_RS17045 (JJC01_17005) - 3667836..3668006 (+) 171 WP_227834754.1 hypothetical protein -
  JJC01_RS17050 (JJC01_17010) - 3668207..3668698 (+) 492 WP_227834755.1 GNAT family N-acetyltransferase -
  JJC01_RS17055 (JJC01_17015) - 3668891..3669607 (+) 717 WP_227834756.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26656.20 Da        Isoelectric Point: 6.1455

>NTDB_id=525545 JJC01_RS17025 WP_227831313.1 3664328..3665035(-) (scnR) [Clostridioides sp. ES-S-0010-02]
METIKDKKILVVDDHKELLKMIDEILRKDGFNRIFLASSYEEAVKVFKNIKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLIGILNRVYIPMEEEELPVFKLGDSVVVNLNTACVKKDGQEIS
LTAKEHSLLLKLYENKGRIVTSDALCQAIWGDDMYGYENTLMVHVRRVREKIEEAPSSPKHLLTVRGLGYKLIVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=525545 JJC01_RS17025 WP_227831313.1 3664328..3665035(-) (scnR) [Clostridioides sp. ES-S-0010-02]
ATGGAAACAATAAAGGATAAAAAAATACTTGTGGTTGATGACCATAAAGAATTATTAAAAATGATAGATGAAATCTTAAG
AAAAGATGGATTTAATAGAATTTTTCTAGCCTCTAGTTATGAAGAAGCTGTGAAAGTATTTAAAAATATAAAACCAGACT
GTGCAATTTTAGATGTAGTATTGCCAGATGGAGATGGATTTTCTATTATGAGAAAAATTAGAGAGACGTCTAAGATACCA
GTTATTTTTCTTTCTGCAAGAGGAGAGGATGAAGATAGATTGATTGGTTTGGGTTTAGGAGCTGATGATTATATAGTAAA
GCCATTTTTACCTAAAGAACTTACTTTAAGGTTAATAGGTATACTAAATCGTGTATATATTCCTATGGAAGAAGAGGAGT
TGCCAGTATTTAAACTAGGAGATTCTGTTGTTGTAAATTTAAATACTGCATGTGTAAAAAAAGATGGACAAGAAATATCT
TTAACTGCTAAAGAACATTCCCTGCTTTTAAAGTTGTATGAAAATAAAGGGCGAATTGTTACTAGTGATGCACTATGTCA
AGCTATATGGGGGGATGACATGTATGGGTATGAAAATACTCTTATGGTACATGTTAGGAGAGTTAGAGAAAAGATAGAGG
AAGCACCATCTTCTCCTAAGCATCTTCTTACAGTAAGAGGGCTTGGATATAAATTAATTGTTAATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.216

98.298

0.494
  micA Streptococcus pneumoniae Cp1015

39.574

100

0.396
  vicR Streptococcus mutans UA159

38.793

98.723

0.383