Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   T15_RS08095 Genome accession   NC_022665
Coordinates   1613123..1613806 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis T15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608123..1618806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T15_RS08070 (T15_1603) - 1608435..1608752 (-) 318 WP_023371015.1 PadR family transcriptional regulator -
  T15_RS08075 (T15_1604) - 1608749..1608913 (-) 165 WP_023371017.1 hypothetical protein -
  T15_RS08080 (T15_1605) - 1609281..1611281 (-) 2001 WP_023371019.1 ABC transporter permease -
  T15_RS08085 (T15_1606) - 1611283..1612041 (-) 759 WP_023371021.1 ABC transporter ATP-binding protein -
  T15_RS08090 (T15_1607) - 1612139..1612855 (-) 717 WP_023371023.1 sensor histidine kinase -
  T15_RS11930 (T15_1608) - 1612879..1613130 (-) 252 WP_023371025.1 hypothetical protein -
  T15_RS08095 (T15_1609) braR 1613123..1613806 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  T15_RS08100 (T15_1610) - 1613976..1615157 (+) 1182 WP_023371027.1 DUF2974 domain-containing protein -
  T15_RS08105 (T15_1611) - 1615172..1616296 (-) 1125 WP_023371029.1 aminotransferase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=52547 T15_RS08095 WP_002936735.1 1613123..1613806(-) (braR) [Streptococcus suis T15]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=52547 T15_RS08095 WP_002936735.1 1613123..1613806(-) (braR) [Streptococcus suis T15]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACCTCCCGTGTGCCTATTATGTTTCTTTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAACTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTTAGTCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment