Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JIO00_RS25140 Genome accession   NZ_CP067098
Coordinates   5557042..5558382 (+) Length   446 a.a.
NCBI ID   WP_200667032.1    Uniprot ID   -
Organism   Pseudomonas sp. SW-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5552042..5563382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS25115 (JIO00_25115) pgeF 5552261..5552980 (-) 720 WP_200667030.1 peptidoglycan editing factor PgeF -
  JIO00_RS25120 (JIO00_25120) rluD 5552977..5553939 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JIO00_RS25125 (JIO00_25125) - 5554091..5555113 (+) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  JIO00_RS25130 (JIO00_25130) - 5555227..5555460 (+) 234 WP_010467554.1 PP0621 family protein -
  JIO00_RS25135 (JIO00_25135) pilS 5555450..5557039 (+) 1590 WP_083375728.1 PAS domain-containing sensor histidine kinase Regulator
  JIO00_RS25140 (JIO00_25140) pilR 5557042..5558382 (+) 1341 WP_200667032.1 sigma-54 dependent transcriptional regulator Regulator
  JIO00_RS25145 (JIO00_25145) thiO 5558512..5559612 (-) 1101 WP_200667034.1 glycine oxidase ThiO -
  JIO00_RS25150 (JIO00_25150) - 5559671..5560072 (-) 402 WP_077749389.1 type IV pilin protein -
  JIO00_RS25155 (JIO00_25155) - 5560087..5563197 (-) 3111 WP_200667036.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49826.32 Da        Isoelectric Point: 6.6182

>NTDB_id=525034 JIO00_RS25140 WP_200667032.1 5557042..5558382(+) (pilR) [Pseudomonas sp. SW-3]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLMRETFELCLTDMRLPDGTGLELVQYIQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEMVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASH
VLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCENKQIEASDLRLAEGNCTAESGVPDLTQIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=525034 JIO00_RS25140 WP_200667032.1 5557042..5558382(+) (pilR) [Pseudomonas sp. SW-3]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCCGATATCCGCGAACTACTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAAGCCTTGTTGATGCGCGAGACATTCGAGCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGTTGGTGCAGTACATCCAGCAGCGTTACCCACACGTGCCGGTGGCG
ATGATCACCGCTTACGGCAGCCTCGAAACAGCGATCAACGCCCTCAAGGCAGGGGCTTTCGACTTCCTGACCAAGCCGGT
TGACCTGACGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCGGCACCGGGTGGCGCCAGTACCGCCATCGATC
GCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCACGCAGTCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCCCGACTGATCCACGAGCAGGGCCCGCGGGCTAATCAACC
GTTCGTCCCGGTCAACTGCGGGGCAATTCCGTCAGAGTTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCAGGGCTGTTCCAGGCCGCCCACGGCGGCACACTGTTTCTCGACGAAGTGGCCGATCTG
CCCTTGGCGATGCAGGTCAAACTGCTCCGAGCCATTCAGGAGAAAGCCATTCGCAGTGTCGGCGGTCAGCAAGAAATGGT
GGTTGATGTCCGCATCCTTTGTGCCACCCACAAAGACCTCGATGCCGAAGTCACCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTGCGCGTCCCCCCTTTGCGCGAGCGCCGCGACGACATCGAACCGCTGGCCAGCCAT
GTGCTCAAGCGCCTGGCGGCCGGCAGCGGTCAACCCGCCGCAAAACTCCATCCACTCGCCCTGGACGCACTGAAAAGTTA
CCGTTTTCCGGGCAACGTGCGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGAACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGTAACTGCACGGCAGAGAGCGGCGTGCCGGACCTGACGCAAATCGATAACCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCAGATCGATGCGATATCGGCTCAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

99.327

0.785
  pilR Acinetobacter baumannii strain A118

49.028

100

0.509