Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JIO00_RS25135 Genome accession   NZ_CP067098
Coordinates   5555450..5557039 (+) Length   529 a.a.
NCBI ID   WP_083375728.1    Uniprot ID   -
Organism   Pseudomonas sp. SW-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5550450..5562039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS25115 (JIO00_25115) pgeF 5552261..5552980 (-) 720 WP_200667030.1 peptidoglycan editing factor PgeF -
  JIO00_RS25120 (JIO00_25120) rluD 5552977..5553939 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JIO00_RS25125 (JIO00_25125) - 5554091..5555113 (+) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  JIO00_RS25130 (JIO00_25130) - 5555227..5555460 (+) 234 WP_010467554.1 PP0621 family protein -
  JIO00_RS25135 (JIO00_25135) pilS 5555450..5557039 (+) 1590 WP_083375728.1 PAS domain-containing sensor histidine kinase Regulator
  JIO00_RS25140 (JIO00_25140) pilR 5557042..5558382 (+) 1341 WP_200667032.1 sigma-54 dependent transcriptional regulator Regulator
  JIO00_RS25145 (JIO00_25145) thiO 5558512..5559612 (-) 1101 WP_200667034.1 glycine oxidase ThiO -
  JIO00_RS25150 (JIO00_25150) - 5559671..5560072 (-) 402 WP_077749389.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58496.30 Da        Isoelectric Point: 6.9037

>NTDB_id=525033 JIO00_RS25135 WP_083375728.1 5555450..5557039(+) (pilS) [Pseudomonas sp. SW-3]
MVAETSTPGGKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLAFAQDDLLRSGSWLYLVLNILLVVFWQNTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAISNTLLRGRIGLLIAAVAALGIVGLGFLLSFSHPISPGEYLQVGTLG
ALCFAAALLVQGLIRRLEVSENLAEQRASEVLGLEALNALILHRMRTGILVLDDQRRVRLANQSALTLLGQNDLDGQLID
DYSPALVERLQLWFNNPSLRPQSLKIASNGIELQPSFIALDQSPNHHTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGATDR
QLIHLHIGPGDFKTLMDPNQLTQILDNLLRNAWRHSALNHDLAQAWLELFVEPDSQLPTLEVRDNGPGVAPDQQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=525033 JIO00_RS25135 WP_083375728.1 5555450..5557039(+) (pilS) [Pseudomonas sp. SW-3]
GTGGTCGCTGAGACGTCCACTCCCGGCGGCAAACAGGCACAGCGACTGCTGCGTCTTTACCATCTCTACCGTTTAAGCGT
CGGCATCACTCTCGTACTGTTGATTTCCAGCAACATGGACAACCAGCTGCTGGCCTTCGCCCAGGATGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTCTTTTGGCAGAACACCCGACGGCCGGCACAGCTTTTC
AGCCTTGCATTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGTGTGGCCAGCGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCAGCAACACCCTGTTGCGCGGACGTATCGGCTTGTTGATCGCGGCGGTCGCCGCCCTTG
GCATCGTCGGCCTTGGCTTCCTCCTGAGTTTCAGTCACCCGATCAGTCCCGGCGAGTACCTGCAAGTCGGCACTCTCGGC
GCGCTGTGTTTTGCCGCGGCGTTGCTGGTGCAAGGTCTGATCAGGCGACTGGAAGTCAGCGAAAACCTCGCCGAACAGCG
AGCCAGTGAAGTGCTTGGCCTGGAAGCGCTCAATGCGCTGATCCTGCACCGCATGCGCACGGGCATTCTGGTGCTGGACG
ACCAGCGGCGGGTGCGACTGGCCAATCAAAGCGCCTTGACCTTACTGGGGCAGAACGACCTCGATGGTCAGCTGATCGAC
GACTATTCGCCGGCCTTGGTCGAACGCCTTCAGCTGTGGTTCAACAATCCATCGCTGCGACCGCAAAGCCTGAAAATCGC
CAGCAATGGCATAGAACTGCAACCCAGCTTCATTGCGTTGGACCAAAGCCCGAACCACCACACCCTGGTATTTCTGGAGG
ACCTCGCCCAGATCGCTCAACAAGCGCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACGGCGGGTATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCGTTAGTCATGCCGCGCAGCTATTGCAGGAATCCGAGGAACTGAACGGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGTACCGCAACGGCTCGATCTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGTGAAGGCGCGACCGATCGC
CAGTTGATTCACCTGCACATCGGCCCGGGCGACTTCAAAACCCTGATGGACCCGAATCAGCTGACTCAGATTCTCGACAA
TCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTGAATCACGACCTGGCGCAGGCCTGGCTCGAGTTGTTTGTCGAGCCCG
ACAGCCAGTTGCCGACGCTCGAAGTCCGGGACAACGGCCCCGGCGTGGCGCCGGACCAACAGACGCATTTGTTCGAACCG
TTCTTCACCACCAGTAGCCAGGGCACAGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGTGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

PAS domain (PAS_8)

(201-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605