Detailed information NTG0525019

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: JIO00_RS08010
• Genome accession: NZ_CP067098
• Coordinates: 1789805..1792039 (+)
• Length: 744 a.a.
• NCBI ID: WP_200667938.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SW-3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1784805..1797039

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JIO00_RS07985 (JIO00_07985)	-	1785841..1786500 (+)	660	WP_200667934.1	transglutaminase family protein	-
JIO00_RS07990 (JIO00_07990)	-	1786544..1787167 (+)	624	WP_200667936.1	glutathione S-transferase	-
JIO00_RS07995 (JIO00_07995)	-	1787301..1788233 (+)	933	WP_010461902.1	ATP-binding cassette domain-containing protein	-
JIO00_RS08000 (JIO00_08000)	-	1788230..1789009 (+)	780	WP_010461900.1	ABC transporter permease	-
JIO00_RS08005 (JIO00_08005)	-	1789151..1789669 (-)	519	WP_010461897.1	DUF2062 domain-containing protein	-
JIO00_RS08010 (JIO00_08010)	comA	1789805..1792039 (+)	2235	WP_200667938.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
JIO00_RS08015 (JIO00_08015)	exbB	1792138..1792773 (+)	636	WP_010461893.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
JIO00_RS08020 (JIO00_08020)	-	1792770..1793201 (+)	432	WP_010461891.1	biopolymer transporter ExbD	-
JIO00_RS08025 (JIO00_08025)	lpxK	1793201..1794211 (+)	1011	WP_200667940.1	tetraacyldisaccharide 4'-kinase	-
JIO00_RS08030 (JIO00_08030)	-	1794237..1794422 (+)	186	WP_010461887.1	Trm112 family protein	-
JIO00_RS08035 (JIO00_08035)	kdsB	1794419..1795183 (+)	765	WP_200667942.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
JIO00_RS08040 (JIO00_08040)	-	1795183..1795647 (+)	465	WP_077748003.1	low molecular weight protein-tyrosine-phosphatase	-
JIO00_RS08045 (JIO00_08045)	murB	1795644..1796663 (+)	1020	WP_200667944.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81491.84 Da
• Isoelectric Point: 10.2609

>NTDB_id=525019 JIO00_RS08010 WP_200667938.1 1789805..1792039(+) (comA) [Pseudomonas sp. SW-3]
MRTGMMALALGLLALRFLPVLPPVWLWMLLPVVGLMLLPFRTHPLAFFLFGFSWACASAQWALDDRLSLKLDGETRWVEG
RVTGLPQNAEGVVRFELTDSQSRSTRLPRHLRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGHRLAAAQWAWRDSIRQQLQAVDAQGRTGALIALVLGDGGGLSREDWQVLQDTGAVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLILGLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLVDLLFKGLALMAGRFPAWVPVAVPVWIWALGTLGAFLLLLPKGVPLRPLGWPLLLLLV
FPPRPMLAEGVAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDFDLGERVVLPSLRKLGVSGIDLMLLSHADADHAGGA
RAIANGLPVARVLSGDPEALPAELRAEGCESGRQWTWDGVDFRLWQWTSAADSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLAALQPKAVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSATHGAIRLQL
GRFKPPWTMRLDRRFWRDPPPLGP

Nucleotide

• Length: 2235 bp

>NTDB_id=525019 JIO00_RS08010 WP_200667938.1 1789805..1792039(+) (comA) [Pseudomonas sp. SW-3]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGTTTTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTCGTGGGTTTGATGCTGTTGCCGTTTCGGACTCACCCGTTGGCGTTTTTTCTGTTCGGCTTCAGTT
GGGCGTGCGCGAGTGCGCAGTGGGCGCTGGATGATCGCCTGTCGCTGAAGCTCGATGGCGAGACTCGTTGGGTCGAAGGT
CGGGTGACGGGCCTGCCGCAGAATGCCGAAGGGGTGGTGCGCTTCGAGTTGACCGACAGTCAGTCCCGAAGCACCCGGCT
GCCCCGGCATCTGCGCCTCGCCTGGTATGACGGACCGCCCGTCAACAGCGGCGAACGGTGGCGGCTGGCGGTCAAGTTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCCTTTGACTACGACGCCTGGTTGCTGGCACAACGCATCGGCGCTACCGGT
ACGGTCAAGGATGGCCATAGGCTGGCCGCCGCCCAATGGGCCTGGCGTGACAGCATTCGGCAGCAATTGCAGGCCGTCGA
TGCCCAAGGCCGGACGGGGGCGCTGATCGCATTGGTGTTGGGCGACGGCGGCGGGCTGAGTCGCGAGGACTGGCAAGTGC
TGCAAGACACCGGCGCCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGTCTGTGGCCGAGCCGTTTGCCCTGGCTGCCATGGGCCTGCGGACTGGCGTTTGCCGC
TGCGCTGGGTTACGGGTTGCTGGCCGGTTTTGAGGTGCCGGTGCGCCGGGCCTGCGTGATGATCGGTCTGGTGTTGTTGT
GGCGGCTAAGGTTTCGGCACCTTGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGCGTTTTACTGCTCGACCCGCTG
GCGAGCCTGCAACCGGGGTTCTGGTTGTCCTTCGCAGCGGTGGCAGTGTTGATCTTCACCTTCGGTGGGCGTCTGGGGCC
GTGGCGTTGGTGGCAAACGTGGACCCGTGCGCAATGGCTGATCGCGATCGGACTGTGCCCATTGCTATTGATACTTGGCT
TGCCGATCAGCGTCAGCGGACCAGTGGCCAATTTGCTGGCGGTACCTTGGGTCAGTCTGGTGGTATTGCCGCCAGCTTTG
CTCGGGACGTTGTTACTGCCCGTCCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGTCTGGTCGACCTGTTGTT
CAAGGGGCTGGCCTTGATGGCCGGACGATTCCCCGCCTGGGTGCCGGTCGCGGTGCCGGTGTGGATTTGGGCGCTCGGTA
CGCTGGGGGCCTTTCTTCTATTACTGCCTAAAGGGGTGCCGTTGCGCCCGTTGGGTTGGCCGCTGCTGCTGTTGCTGGTT
TTTCCACCTCGCCCGATGCTTGCCGAAGGCGTCGCCGAAGTCTGGCAGCTGGACGTCGGCCAAGGCCTGGCCATCCTGGT
GCGCACCCGCCATCACACCTTGTTGTATGACGCCGGGCCGCGTTTTGGCGATTTCGACCTCGGCGAGCGGGTGGTGCTGC
CGTCATTGCGCAAACTGGGCGTGTCCGGGATCGACCTGATGCTGCTCAGTCACGCCGACGCCGATCACGCCGGCGGTGCA
CGTGCGATTGCCAACGGATTGCCGGTGGCGCGGGTCCTGAGCGGTGATCCCGAGGCGCTGCCAGCCGAATTGCGCGCCGA
AGGCTGTGAAAGCGGCCGGCAATGGACCTGGGACGGTGTGGACTTCCGTCTCTGGCAATGGACATCCGCCGCCGACAGCA
ATCAAAAATCCTGTGTCTTGCAGATCGAAGCCAATGGCGAGCGATTGCTGCTGACCGGTGATATTGATGCGGCAGCCGAG
CGGGCATTGCTCGACAGTCCGCTTGCCGTGCCGACCGATTGGCTGCAATCGCCTCACCACGGCAGTCGCAGTTCCTCTTC
GATGGCGCTGCTCGCCGCGTTGCAACCCAAGGCTGTGCTGATATCCCGGGGCCAGGGCAATTCCTTTGGCCACCCGCATC
CCACCGTCATGGCGCGCTATCAAAAACGAGGCATGGCGATCTACGACAGCGCCACCCACGGCGCCATTCGTCTGCAACTG
GGACGGTTCAAGCCGCCATGGACGATGCGTCTGGATCGGCGTTTCTGGCGCGATCCGCCACCGTTGGGCCCATAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-166)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.827	96.237	0.614
comA	Ralstonia pseudosolanacearum GMI1000	33.537	100	0.37