Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JIO00_RS08015 Genome accession   NZ_CP067098
Coordinates   1792138..1792773 (+) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas sp. SW-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787138..1797773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO00_RS07995 (JIO00_07995) - 1787301..1788233 (+) 933 WP_010461902.1 ATP-binding cassette domain-containing protein -
  JIO00_RS08000 (JIO00_08000) - 1788230..1789009 (+) 780 WP_010461900.1 ABC transporter permease -
  JIO00_RS08005 (JIO00_08005) - 1789151..1789669 (-) 519 WP_010461897.1 DUF2062 domain-containing protein -
  JIO00_RS08010 (JIO00_08010) comA 1789805..1792039 (+) 2235 WP_200667938.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JIO00_RS08015 (JIO00_08015) exbB 1792138..1792773 (+) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JIO00_RS08020 (JIO00_08020) - 1792770..1793201 (+) 432 WP_010461891.1 biopolymer transporter ExbD -
  JIO00_RS08025 (JIO00_08025) lpxK 1793201..1794211 (+) 1011 WP_200667940.1 tetraacyldisaccharide 4'-kinase -
  JIO00_RS08030 (JIO00_08030) - 1794237..1794422 (+) 186 WP_010461887.1 Trm112 family protein -
  JIO00_RS08035 (JIO00_08035) kdsB 1794419..1795183 (+) 765 WP_200667942.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JIO00_RS08040 (JIO00_08040) - 1795183..1795647 (+) 465 WP_077748003.1 low molecular weight protein-tyrosine-phosphatase -
  JIO00_RS08045 (JIO00_08045) murB 1795644..1796663 (+) 1020 WP_200667944.1 UDP-N-acetylmuramate dehydrogenase -
  JIO00_RS08050 (JIO00_08050) - 1796909..1797379 (+) 471 WP_010461879.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=525020 JIO00_RS08015 WP_010461893.1 1792138..1792773(+) (exbB) [Pseudomonas sp. SW-3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=525020 JIO00_RS08015 WP_010461893.1 1792138..1792773(+) (exbB) [Pseudomonas sp. SW-3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCTGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCGGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCGGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863