Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   JHX84_RS10365 Genome accession   NZ_CP067043
Coordinates   2029472..2030116 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain 19573-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2024472..2035116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS10340 (JHX84_10335) - 2024871..2025212 (-) 342 WP_003152040.1 hypothetical protein -
  JHX84_RS10345 (JHX84_10340) degQ 2025678..2025818 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  JHX84_RS10350 (JHX84_10345) comQ 2026003..2026935 (+) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  JHX84_RS10360 (JHX84_10355) - 2027088..2029391 (+) 2304 Protein_2004 histidine kinase -
  JHX84_RS10365 (JHX84_10360) comA 2029472..2030116 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  JHX84_RS10370 (JHX84_10365) - 2030138..2030521 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  JHX84_RS10375 (JHX84_10370) mnhG 2030561..2030935 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  JHX84_RS10380 (JHX84_10375) - 2030919..2031203 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  JHX84_RS10385 (JHX84_10380) - 2031203..2031679 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  JHX84_RS10390 (JHX84_10385) - 2031685..2033166 (-) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  JHX84_RS10395 (JHX84_10390) - 2033159..2033500 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  JHX84_RS10400 (JHX84_10395) - 2033500..2033931 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=524640 JHX84_RS10365 WP_003152052.1 2029472..2030116(+) (comA) [Bacillus velezensis strain 19573-3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=524640 JHX84_RS10365 WP_003152052.1 2029472..2030116(+) (comA) [Bacillus velezensis strain 19573-3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGGACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864