Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   JHX84_RS08455 Genome accession   NZ_CP067043
Coordinates   1653456..1654145 (+) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain 19573-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648456..1659145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS08430 (JHX84_08425) degS 1648740..1649903 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JHX84_RS08435 (JHX84_08430) degU 1649980..1650669 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JHX84_RS08440 (JHX84_08435) - 1650767..1651615 (+) 849 WP_043867471.1 DegV family protein -
  JHX84_RS08445 (JHX84_08440) comFA 1651723..1653108 (+) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  JHX84_RS08450 (JHX84_08445) - 1653166..1653450 (+) 285 WP_057080260.1 late competence development ComFB family protein -
  JHX84_RS08455 (JHX84_08450) comFC 1653456..1654145 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  JHX84_RS08460 (JHX84_08455) - 1654219..1654638 (+) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  JHX84_RS08465 (JHX84_08460) flgM 1654708..1654974 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JHX84_RS08470 (JHX84_08465) - 1654989..1655471 (+) 483 WP_003151394.1 flagellar protein FlgN -
  JHX84_RS08475 (JHX84_08470) flgK 1655487..1657004 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  JHX84_RS08480 (JHX84_08475) flgL 1657016..1657933 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  JHX84_RS08485 (JHX84_08480) - 1658024..1658593 (+) 570 WP_003151397.1 DUF6470 family protein -
  JHX84_RS08490 (JHX84_08485) fliW 1658623..1659054 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=524635 JHX84_RS08455 WP_196616643.1 1653456..1654145(+) (comFC) [Bacillus velezensis strain 19573-3]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=524635 JHX84_RS08455 WP_196616643.1 1653456..1654145(+) (comFC) [Bacillus velezensis strain 19573-3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603