Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JHX84_RS08435 Genome accession   NZ_CP067043
Coordinates   1649980..1650669 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain 19573-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644980..1655669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX84_RS08415 (JHX84_08410) - 1645485..1646561 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  JHX84_RS08420 (JHX84_08415) - 1646651..1647865 (-) 1215 WP_043867473.1 LCP family protein -
  JHX84_RS08425 (JHX84_08420) - 1647870..1648517 (-) 648 WP_043867472.1 YigZ family protein -
  JHX84_RS08430 (JHX84_08425) degS 1648740..1649903 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  JHX84_RS08435 (JHX84_08430) degU 1649980..1650669 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  JHX84_RS08440 (JHX84_08435) - 1650767..1651615 (+) 849 WP_043867471.1 DegV family protein -
  JHX84_RS08445 (JHX84_08440) comFA 1651723..1653108 (+) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  JHX84_RS08450 (JHX84_08445) - 1653166..1653450 (+) 285 WP_057080260.1 late competence development ComFB family protein -
  JHX84_RS08455 (JHX84_08450) comFC 1653456..1654145 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  JHX84_RS08460 (JHX84_08455) - 1654219..1654638 (+) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  JHX84_RS08465 (JHX84_08460) flgM 1654708..1654974 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JHX84_RS08470 (JHX84_08465) - 1654989..1655471 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=524633 JHX84_RS08435 WP_003219701.1 1649980..1650669(+) (degU) [Bacillus velezensis strain 19573-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=524633 JHX84_RS08435 WP_003219701.1 1649980..1650669(+) (degU) [Bacillus velezensis strain 19573-3]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1