Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JHZ65_RS18250 Genome accession   NZ_CP067024
Coordinates   4097557..4099773 (-) Length   738 a.a.
NCBI ID   WP_122388955.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. maculicola strain MAFF 302723     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4092557..4104773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHZ65_RS18220 (JHZ65_18225) murB 4093356..4094375 (-) 1020 WP_005770641.1 UDP-N-acetylmuramate dehydrogenase -
  JHZ65_RS18225 (JHZ65_18230) kdsB 4094410..4095174 (-) 765 WP_122388956.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JHZ65_RS18230 (JHZ65_18235) - 4095171..4095356 (-) 186 WP_003381112.1 Trm112 family protein -
  JHZ65_RS18235 (JHZ65_18240) lpxK 4095374..4096369 (-) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  JHZ65_RS18240 (JHZ65_18245) - 4096369..4096800 (-) 432 WP_005770645.1 ExbD/TolR family protein -
  JHZ65_RS18245 (JHZ65_18250) exbB 4096797..4097474 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JHZ65_RS18250 (JHZ65_18255) comA 4097557..4099773 (-) 2217 WP_122388955.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JHZ65_RS18255 (JHZ65_18260) - 4100011..4102038 (+) 2028 WP_005770647.1 type VI secretion system tip protein VgrG -
  JHZ65_RS18260 (JHZ65_18265) - 4102035..4102886 (+) 852 WP_011104750.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80620.02 Da        Isoelectric Point: 10.4494

>NTDB_id=524532 JHZ65_RS18250 WP_122388955.1 4097557..4099773(-) (comA) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
MRSGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALKDRLQQRLDGQTLWLQG
KVAGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLVRWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPVPVVGEGLLWLAGGALQWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELTRLAPQLDARLCENNERWEWDGVVFSTWRWEQAPNGNAGSCMLSVDAGGERLLLTGDIDVHAE
CAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQAVAPLGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=524532 JHZ65_RS18250 WP_122388955.1 4097557..4099773(-) (comA) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
ATGCGCTCAGGGATGATCGCGCTCGCGTTGGGGCTGGTGGCCCTGCGCTTTCTGCCGGTTTTGCCGCCGATCTGGCTCTT
GTTGCTAATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACCTATCCACTGGCGCTGTTCCTGCTCGGCTTCACGT
GGGCGTGCGTTTCGGCGCAGTGGGCGTTGAAAGACCGTTTGCAGCAACGGCTGGACGGCCAGACACTGTGGCTGCAAGGC
AAAGTGGCCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAACACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATCCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGACTGGCGGTAAAGCTCA
AGCGCCCCGGCGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCACAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTTGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTTGCTGGCGTGATTTACGCGTTG
GTCGCAGGTCTCGTCCGCTGGGGACTGTGGCCACGGGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCGTTCATTGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTATTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCAATCGGCTTGTTGCCGATTTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTTGCCAACCTGCTCGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCACTG
ATCGGCACGTTGCTGCTGCCGGTCCCCGTTGTTGGCGAGGGCCTGCTCTGGCTGGCGGGAGGCGCGCTGCAATGGCTGTT
CGTGTTTCTCGGTTGGGTAGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCATGGCTGTTGAGTC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGCTGGCCATTGTTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCTGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACACTGCTCTACGATGCAGGGCCGCGTTTCGGTGAGTTCGATATCGGCCAACGGGTGGTCGTGC
CGGCGATGCGCAAGTCCGGTGTTCGTCACTTGGATCTGATGCTGATCAGCCATGCCGATGCGGATCATGCCGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGCGTGCTGGGCGGGGAACTGACCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCAACGGTA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
TGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGGCGGTTGCGCCGCTGGGCGTGCTCATTTCCCGCGGGCAGAACAATGCCTTCGGTCATCCGCATC
CGTTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAGCGGGCTCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.687

97.019

0.618
  comA Ralstonia pseudosolanacearum GMI1000

32.5

100

0.37