Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JHZ65_RS18245 Genome accession   NZ_CP067024
Coordinates   4096797..4097474 (-) Length   225 a.a.
NCBI ID   WP_003381119.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. maculicola strain MAFF 302723     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4091797..4102474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHZ65_RS18220 (JHZ65_18225) murB 4093356..4094375 (-) 1020 WP_005770641.1 UDP-N-acetylmuramate dehydrogenase -
  JHZ65_RS18225 (JHZ65_18230) kdsB 4094410..4095174 (-) 765 WP_122388956.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JHZ65_RS18230 (JHZ65_18235) - 4095171..4095356 (-) 186 WP_003381112.1 Trm112 family protein -
  JHZ65_RS18235 (JHZ65_18240) lpxK 4095374..4096369 (-) 996 WP_005770644.1 tetraacyldisaccharide 4'-kinase -
  JHZ65_RS18240 (JHZ65_18245) - 4096369..4096800 (-) 432 WP_005770645.1 ExbD/TolR family protein -
  JHZ65_RS18245 (JHZ65_18250) exbB 4096797..4097474 (-) 678 WP_003381119.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JHZ65_RS18250 (JHZ65_18255) comA 4097557..4099773 (-) 2217 WP_122388955.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JHZ65_RS18255 (JHZ65_18260) - 4100011..4102038 (+) 2028 WP_005770647.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24257.56 Da        Isoelectric Point: 8.5248

>NTDB_id=524531 JHZ65_RS18245 WP_003381119.1 4096797..4097474(-) (exbB) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGVLASGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=524531 JHZ65_RS18245 WP_003381119.1 4096797..4097474(-) (exbB) [Pseudomonas syringae pv. maculicola strain MAFF 302723]
GTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCCGATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGCCGCACCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAA
AGAAACTCGATAACGAAAAGCTCAAGCAGTTGCGCGCCGACTCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAAGAATGCATCGAAGAAGCCGCCGCCCGTGTCATCCATGACCTGGAGCGCTACCT
GAGCGCGCTGGGCTCTATCGCCGCGATGGCCCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGAGATCTTCG
GTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTGCTGGCAAGCGGTATCTCCAAGGCACTGATCTGTACCGCA
TCGGGCCTTATCGTCGCGATCCCGGCGATCTTCTTTCACCGCTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGCAT
GGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGATCGACGCCAAAATCGACCTCA
AGTCGCTGGCCAGGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738