Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   JFY49_RS09875 Genome accession   NZ_CP067019
Coordinates   1988462..1989169 (+) Length   235 a.a.
NCBI ID   WP_166166679.1    Uniprot ID   -
Organism   Acinetobacter sp. CS-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983462..1994169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS09865 (JFY49_09865) clpB 1984860..1987442 (-) 2583 WP_180041814.1 ATP-dependent chaperone ClpB -
  JFY49_RS09870 (JFY49_09870) - 1987892..1988314 (-) 423 WP_166166676.1 OsmC family protein -
  JFY49_RS09875 (JFY49_09875) crp 1988462..1989169 (+) 708 WP_166166679.1 cAMP-activated global transcriptional regulator CRP Regulator
  JFY49_RS09880 (JFY49_09880) - 1989355..1990404 (+) 1050 WP_200222705.1 NADP(H)-dependent aldo-keto reductase -
  JFY49_RS09885 (JFY49_09885) - 1990597..1991373 (-) 777 WP_166166685.1 M48 family metallopeptidase -
  JFY49_RS09890 (JFY49_09890) - 1991487..1991795 (-) 309 WP_166166688.1 hypothetical protein -
  JFY49_RS09895 (JFY49_09895) - 1991986..1993305 (-) 1320 WP_086195597.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26359.89 Da        Isoelectric Point: 4.5965

>NTDB_id=524474 JFY49_RS09875 WP_166166679.1 1988462..1989169(+) (crp) [Acinetobacter sp. CS-2]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTAIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIQTDGKAILIYDVSAEDSNAALEDEDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=524474 JFY49_RS09875 WP_166166679.1 1988462..1989169(+) (crp) [Acinetobacter sp. CS-2]
ATGACTTCAAACTTTTCACAACTTAGCACTGATGCGCTGTCTCCTGGTCAACTCCCTGAGTCAGTAAAAGCATTATTAAA
ACGTGCATATATAAATCGTTATCCAAAACGCACTGCAATTGTAGATGCAGGCTCAGAATCAAAATCGCTTTATTTGATTT
TAAAAGGTTCAGTATCCATTATTTTACGTGAAGATGATGATCGTGAAATTGTGGTTGCCTATTTGAATGCTGGAGACTTT
TTTGGGGAAATGGGTCTTTTTGAAGCAAATCCACAACGTACTGCAGAAGTTCGTACACGTGACGTATGTGAAATTGCCGA
AATCACCTATGAAAACTTCCACGAATTAAGCAAACAGTATCCAGACCTGAGCTATGCCGTATTTGCCCAGCTTGTACGTC
GCTTAAAAAATACCACTCGTAAAGTGACTGACCTGGCATTTATTGATGTATCTGGCCGTATTGCACGCTGCCTGATTGAC
CTGTCTTCTCAACCAGAAGCCATGATTTTACCGAATGGACGTCAAATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
TGGTTGTTCCCGTGAAATGGTCGGTCGTGTCCTCAAAACACTGGAAGAACAAGGCATGATCCAGACTGATGGTAAAGCCA
TCCTGATTTATGATGTTTCTGCTGAAGATAGCAATGCAGCTTTAGAAGACGAGGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396