Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   JCR30_RS04810 Genome accession   NZ_CP067008
Coordinates   908059..909369 (+) Length   436 a.a.
NCBI ID   WP_011888847.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain iGAS426     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 903059..914369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCR30_RS04795 (JCR30_04795) phoU 903652..904305 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  JCR30_RS04800 (JCR30_04800) - 904510..907047 (+) 2538 WP_011888846.1 M1 family metallopeptidase -
  JCR30_RS04805 (JCR30_04805) ciaR 907392..908066 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  JCR30_RS04810 (JCR30_04810) ciaH 908059..909369 (+) 1311 WP_011888847.1 HAMP domain-containing sensor histidine kinase Regulator
  JCR30_RS04815 (JCR30_04815) rpsT 909494..909742 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  JCR30_RS04820 (JCR30_04820) coaA 909796..910716 (-) 921 WP_002984525.1 type I pantothenate kinase -
  JCR30_RS04825 (JCR30_04825) - 910984..911577 (+) 594 WP_002989699.1 class I SAM-dependent methyltransferase -
  JCR30_RS04830 (JCR30_04830) - 912231..912620 (+) 390 WP_002984531.1 cytidine deaminase -
  JCR30_RS04835 (JCR30_04835) - 912714..913766 (+) 1053 WP_076640667.1 BMP family protein -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50211.80 Da        Isoelectric Point: 9.4081

>NTDB_id=524233 JCR30_RS04810 WP_011888847.1 908059..909369(+) (ciaH) [Streptococcus pyogenes strain iGAS426]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLRSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=524233 JCR30_RS04810 WP_011888847.1 908059..909369(+) (ciaH) [Streptococcus pyogenes strain iGAS426]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGAGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.666

100

0.578

  ciaH Streptococcus pneumoniae Rx1

51.142

100

0.514

  ciaH Streptococcus pneumoniae D39

51.142

100

0.514

  ciaH Streptococcus pneumoniae R6

51.142

100

0.514

  ciaH Streptococcus pneumoniae TIGR4

51.142

100

0.514