Detailed information NTG0052387

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: U471_RS12370
• Genome accession: NC_022653
• Coordinates: 2603822..2604427 (-)
• Length: 201 a.a.
• NCBI ID: WP_003152683.1
• Uniprot ID: A7Z769
• Organism: Bacillus amyloliquefaciens CC178
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2598822..2609427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U471_RS12335 (U471_25740)	-	2598835..2599491 (-)	657	WP_003152699.1	DUF421 domain-containing protein	-
U471_RS12340 (U471_25750)	-	2599658..2600044 (+)	387	WP_003152697.1	TIGR04086 family membrane protein	-
U471_RS12345 (U471_25760)	yajC	2600096..2600374 (-)	279	WP_041482206.1	preprotein translocase subunit YajC	-
U471_RS12350 (U471_25770)	tgt	2600387..2601532 (-)	1146	WP_007408186.1	tRNA guanosine(34) transglycosylase Tgt	-
U471_RS12355 (U471_25780)	queA	2601560..2602588 (-)	1029	WP_012118092.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
U471_RS12360 (U471_25790)	-	2602614..2602814 (-)	201	WP_023357061.1	DUF2905 domain-containing protein	-
U471_RS12365 (U471_25800)	ruvB	2602807..2603811 (-)	1005	WP_007408185.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
U471_RS12370 (U471_25810)	ruvA	2603822..2604427 (-)	606	WP_003152683.1	Holliday junction branch migration protein RuvA	Machinery gene
U471_RS12375 (U471_25820)	-	2604562..2605071 (-)	510	WP_012118093.1	intercompartmental signaling factor BofC	-
U471_RS20335 (U471_25830)	-	2605203..2605322 (-)	120	WP_023357063.1	hypothetical protein	-
U471_RS12385 (U471_25840)	-	2605456..2606049 (-)	594	WP_014721606.1	YhcN/YlaJ family sporulation lipoprotein	-
U471_RS12390 (U471_25850)	safA	2606197..2607417 (-)	1221	WP_012118096.1	SafA/ExsA family spore coat assembly protein	-
U471_RS12395 (U471_25860)	nadA	2607544..2608647 (-)	1104	WP_012118097.1	quinolinate synthase NadA	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22414.85 Da
• Isoelectric Point: 5.1597

>NTDB_id=52387 U471_RS12370 WP_003152683.1 2603822..2604427(-) (ruvA) [Bacillus amyloliquefaciens CC178]
MIEFVKGTIDYVSPQYIVIENGGIGYQVFTPNPFIYKVSNQETIFTYHHIKEDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIEAIEQEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIDNLFNHEARIEKQEAETALDEAL
EALRVLGYAEKEIKKVLPHLKEETALSTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=52387 U471_RS12370 WP_003152683.1 2603822..2604427(-) (ruvA) [Bacillus amyloliquefaciens CC178]
GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACATCGTGATTGAAAACGGCGGAATCGGCTATCA
GGTCTTCACTCCGAATCCGTTTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATAAAAGAAGATG
CCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGCGCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCG
AAAGGGGCGCTCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAACAGGAAGATGAAGCCTTTTT
GGTGAAATTTCCGGGTGTGGGCAAAAAAACGGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC
CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAAGAGGCTGAAACGGCGCTTGACGAGGCGCTT
GAAGCGCTCCGGGTTCTCGGCTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAACGGCGCTTTC
AACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: A7Z769

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	92.537	100	0.925
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408