Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH308_RS15045 Genome accession   NZ_CP066979
Coordinates   3407248..3408642 (+) Length   464 a.a.
NCBI ID   WP_267314854.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 55-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402248..3413642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH308_RS15020 (JH308_15000) - 3402305..3402607 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH308_RS15025 (JH308_15005) - 3402611..3403021 (-) 411 WP_029628876.1 DNA-binding protein -
  JH308_RS15030 (JH308_15010) sucD 3403125..3404000 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH308_RS15035 (JH308_15015) sucC 3404025..3405194 (-) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  JH308_RS15040 (JH308_15020) - 3405428..3407038 (+) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  JH308_RS15045 (JH308_15025) pilR 3407248..3408642 (+) 1395 WP_267314854.1 sigma-54 dependent transcriptional regulator Regulator
  JH308_RS15050 (JH308_15030) - 3408840..3409196 (+) 357 WP_139328384.1 hypothetical protein -
  JH308_RS15055 (JH308_15035) - 3409196..3409933 (+) 738 WP_070690009.1 zeta toxin family protein -
  JH308_RS15060 (JH308_15040) pilB 3410116..3411822 (-) 1707 WP_181920283.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH308_RS15065 (JH308_15045) pilA2 3412065..3412484 (-) 420 WP_116670568.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50335.73 Da        Isoelectric Point: 6.5131

>NTDB_id=523794 JH308_RS15045 WP_267314854.1 3407248..3408642(+) (pilR) [Xanthomonas campestris pv. campestris strain 55-2]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLSDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523794 JH308_RS15045 WP_267314854.1 3407248..3408642(+) (pilR) [Xanthomonas campestris pv. campestris strain 55-2]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTCCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTAGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGAGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491