Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH274_RS04980 Genome accession   NZ_CP066968
Coordinates   1165294..1166688 (-) Length   464 a.a.
NCBI ID   WP_070690014.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 16-8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1143873..1171630 1165294..1166688 within 0


Gene organization within MGE regions


Location: 1143873..1171630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH274_RS04880 (JH274_04870) - 1144832..1144987 (+) 156 WP_011038226.1 hypothetical protein -
  JH274_RS04885 (JH274_04875) - 1145163..1145558 (+) 396 WP_042594933.1 hypothetical protein -
  JH274_RS04890 (JH274_04880) - 1145649..1146041 (+) 393 WP_011038224.1 H-NS family nucleoid-associated regulatory protein -
  JH274_RS04895 (JH274_04885) glgX 1146559..1148688 (-) 2130 WP_274394338.1 glycogen debranching protein GlgX -
  JH274_RS04900 (JH274_04890) rimK 1149182..1150057 (+) 876 WP_076054142.1 30S ribosomal protein S6--L-glutamate ligase -
  JH274_RS04905 (JH274_04895) - 1150708..1151385 (+) 678 WP_003490678.1 response regulator transcription factor -
  JH274_RS04910 (JH274_04900) - 1151378..1152712 (+) 1335 WP_019237347.1 HAMP domain-containing sensor histidine kinase -
  JH274_RS04915 (JH274_04905) - 1152855..1153346 (-) 492 WP_274395994.1 GNAT family N-acetyltransferase -
  JH274_RS04920 (JH274_04910) - 1153343..1153633 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  JH274_RS04925 (JH274_04915) - 1153709..1154110 (-) 402 WP_274395995.1 SymE family type I addiction module toxin -
  JH274_RS04930 (JH274_04920) coaE 1154642..1155265 (-) 624 WP_116670565.1 dephospho-CoA kinase -
  JH274_RS04935 (JH274_04925) - 1155279..1156142 (-) 864 WP_040940797.1 A24 family peptidase -
  JH274_RS04940 (JH274_04930) pilC 1156149..1157408 (-) 1260 WP_274395996.1 type II secretion system F family protein Machinery gene
  JH274_RS04945 (JH274_04935) pilA2 1157763..1158188 (+) 426 WP_274395997.1 pilin Machinery gene
  JH274_RS04950 (JH274_04940) - 1158324..1159916 (+) 1593 WP_337998769.1 phosphoethanolamine transferase -
  JH274_RS04955 (JH274_04945) - 1159927..1160556 (+) 630 WP_012437604.1 hypothetical protein -
  JH274_RS04960 (JH274_04950) - 1160526..1162052 (+) 1527 WP_337998762.1 hypothetical protein -
  JH274_RS04965 (JH274_04955) pilB 1162087..1163820 (+) 1734 WP_274396000.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH274_RS04970 (JH274_04960) - 1164003..1164740 (-) 738 WP_070690009.1 zeta toxin family protein -
  JH274_RS04975 (JH274_04965) - 1164740..1165096 (-) 357 WP_139328384.1 hypothetical protein -
  JH274_RS04980 (JH274_04970) pilR 1165294..1166688 (-) 1395 WP_070690014.1 sigma-54 dependent transcriptional regulator Regulator
  JH274_RS04985 (JH274_04975) - 1166897..1168507 (-) 1611 WP_274396002.1 HAMP domain-containing sensor histidine kinase -
  JH274_RS04990 (JH274_04980) sucC 1168741..1169910 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH274_RS04995 (JH274_04985) sucD 1169935..1170810 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH274_RS05000 (JH274_04990) - 1170914..1171324 (+) 411 WP_323549302.1 DNA-binding protein -
  JH274_RS05005 (JH274_04995) - 1171328..1171630 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50265.64 Da        Isoelectric Point: 6.3588

>NTDB_id=523679 JH274_RS04980 WP_070690014.1 1165294..1166688(-) (pilR) [Xanthomonas campestris pv. incanae strain 16-8]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523679 JH274_RS04980 WP_070690014.1 1165294..1166688(-) (pilR) [Xanthomonas campestris pv. incanae strain 16-8]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491