Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH273_RS16765 Genome accession   NZ_CP066963
Coordinates   3846807..3848201 (-) Length   464 a.a.
NCBI ID   WP_274507697.1    Uniprot ID   -
Organism   Xanthomonas campestris strain 3054     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3841807..3853201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH273_RS16740 (JH273_16715) - 3841811..3842839 (+) 1029 WP_274507693.1 glycosyltransferase -
  JH273_RS16745 (JH273_16720) - 3842850..3843449 (+) 600 WP_228441064.1 methionine biosynthesis protein MetW -
  JH273_RS16750 (JH273_16725) pilB 3843600..3845333 (+) 1734 WP_274507695.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH273_RS16755 (JH273_16730) - 3845516..3846253 (-) 738 WP_274339071.1 zeta toxin family protein -
  JH273_RS16760 (JH273_16735) - 3846253..3846609 (-) 357 WP_139328384.1 hypothetical protein -
  JH273_RS16765 (JH273_16740) pilR 3846807..3848201 (-) 1395 WP_274507697.1 sigma-54 dependent transcriptional regulator Regulator
  JH273_RS16770 (JH273_16745) - 3848410..3850020 (-) 1611 WP_116901781.1 HAMP domain-containing sensor histidine kinase -
  JH273_RS16775 (JH273_16750) sucC 3850254..3851423 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH273_RS16780 (JH273_16755) sucD 3851448..3852323 (+) 876 WP_274507698.1 succinate--CoA ligase subunit alpha -
  JH273_RS16785 (JH273_16760) - 3852427..3852837 (+) 411 WP_323486830.1 DNA-binding protein -
  JH273_RS16790 (JH273_16765) - 3852841..3853143 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50264.65 Da        Isoelectric Point: 6.5131

>NTDB_id=523649 JH273_RS16765 WP_274507697.1 3846807..3848201(-) (pilR) [Xanthomonas campestris strain 3054]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGNLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523649 JH273_RS16765 WP_274507697.1 3846807..3848201(-) (pilR) [Xanthomonas campestris strain 3054]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCAACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCCGTGGTCGACATCGATCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGGTGGAACAAGACCAGAACTGCCGCGCAGCTAGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAATTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491