Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH272_RS05885 Genome accession   NZ_CP066929
Coordinates   1387814..1389208 (-) Length   464 a.a.
NCBI ID   WP_274361054.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CFBP12825     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1371562..1394152 1387814..1389208 within 0


Gene organization within MGE regions


Location: 1371562..1394152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH272_RS05815 (JH272_05790) coaE 1371562..1372185 (-) 624 WP_274316878.1 dephospho-CoA kinase -
  JH272_RS05820 (JH272_05795) - 1372199..1373062 (-) 864 WP_040940797.1 A24 family peptidase -
  JH272_RS05825 (JH272_05800) pilC 1373069..1374331 (-) 1263 WP_104570928.1 type II secretion system F family protein Machinery gene
  JH272_RS05830 (JH272_05805) pilA/pilAI 1374682..1375080 (+) 399 WP_104570927.1 pilin Machinery gene
  JH272_RS05835 (JH272_05810) - 1375181..1375603 (+) 423 WP_104570926.1 pilin -
  JH272_RS05840 (JH272_05815) - 1375662..1377482 (+) 1821 WP_274361049.1 hypothetical protein -
  JH272_RS05845 (JH272_05820) - 1377606..1378364 (+) 759 WP_274361050.1 class I SAM-dependent methyltransferase -
  JH272_RS05850 (JH272_05825) - 1378300..1379547 (+) 1248 WP_274361051.1 glycosyltransferase family 9 protein -
  JH272_RS05855 (JH272_05830) - 1379550..1380392 (-) 843 WP_147308817.1 glycosyltransferase -
  JH272_RS05860 (JH272_05835) - 1380386..1381558 (-) 1173 WP_228442823.1 glycosyltransferase -
  JH272_RS05865 (JH272_05840) - 1381543..1382406 (-) 864 WP_274361052.1 glycosyltransferase -
  JH272_RS05870 (JH272_05845) - 1382456..1383307 (-) 852 WP_108133901.1 glycosyltransferase family 2 protein -
  JH272_RS05875 (JH272_05850) pilB 1383463..1385199 (+) 1737 WP_040940802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH272_RS05885 (JH272_05860) pilR 1387814..1389208 (-) 1395 WP_274361054.1 sigma-54 dependent transcriptional regulator Regulator
  JH272_RS05890 (JH272_05865) - 1389419..1391029 (-) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  JH272_RS05895 (JH272_05870) sucC 1391263..1392432 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH272_RS05900 (JH272_05875) sucD 1392457..1393332 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH272_RS05905 (JH272_05880) - 1393436..1393846 (+) 411 WP_029628876.1 DNA-binding protein -
  JH272_RS05910 (JH272_05885) - 1393850..1394152 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50321.70 Da        Isoelectric Point: 6.5131

>NTDB_id=523285 JH272_RS05885 WP_274361054.1 1387814..1389208(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP12825]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523285 JH272_RS05885 WP_274361054.1 1387814..1389208(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP12825]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAATTGCTGGCCAGCAACCCGTACGACCTCTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTGCCACCGTTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTTACCCAGTCCGCACTCGA
CGCCTTGAACCAATACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATTCTCGAACGTGCGCTTGCCTTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAGGAGAATCGCTGGAACAAGACCAGAACCGCCGCGCAGCTCGGCATCACGTTTCGTGCGC
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491