Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH261_RS05610 Genome accession   NZ_CP066926
Coordinates   1358912..1360306 (-) Length   464 a.a.
NCBI ID   WP_274318289.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain CFBP6690     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1348581..1365248 1358912..1360306 within 0


Gene organization within MGE regions


Location: 1348581..1365248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH261_RS05560 (JH261_05545) pilC 1348581..1349843 (-) 1263 WP_274318282.1 type II secretion system F family protein Machinery gene
  JH261_RS05565 (JH261_05550) - 1349953..1351920 (-) 1968 WP_274318283.1 hypothetical protein -
  JH261_RS05570 (JH261_05555) - 1351976..1352392 (-) 417 WP_047124751.1 pilin -
  JH261_RS05575 (JH261_05560) - 1352617..1353117 (+) 501 WP_274318284.1 EamA family transporter -
  JH261_RS05580 (JH261_05565) - 1353122..1353916 (+) 795 WP_274318285.1 glycosyltransferase family 2 protein -
  JH261_RS05585 (JH261_05570) - 1353913..1354944 (+) 1032 WP_274318286.1 glycosyltransferase family 2 protein -
  JH261_RS05590 (JH261_05575) - 1354955..1355554 (+) 600 WP_274318287.1 methionine biosynthesis protein MetW -
  JH261_RS05595 (JH261_05580) pilB 1355705..1357438 (+) 1734 WP_228441061.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH261_RS05600 (JH261_05585) - 1357621..1358358 (-) 738 WP_274318288.1 zeta toxin family protein -
  JH261_RS05605 (JH261_05590) - 1358358..1358714 (-) 357 WP_139328384.1 hypothetical protein -
  JH261_RS05610 (JH261_05595) pilR 1358912..1360306 (-) 1395 WP_274318289.1 sigma-54 dependent transcriptional regulator Regulator
  JH261_RS05615 (JH261_05600) - 1360515..1362125 (-) 1611 WP_274318290.1 HAMP domain-containing sensor histidine kinase -
  JH261_RS05620 (JH261_05605) sucC 1362359..1363528 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH261_RS05625 (JH261_05610) sucD 1363553..1364428 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH261_RS05630 (JH261_05615) - 1364532..1364942 (+) 411 WP_323475224.1 DNA-binding protein -
  JH261_RS05635 (JH261_05620) - 1364946..1365248 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50306.69 Da        Isoelectric Point: 6.5131

>NTDB_id=523249 JH261_RS05610 WP_274318289.1 1358912..1360306(-) (pilR) [Xanthomonas campestris pv. incanae strain CFBP6690]
MNETKNALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGSAA
IEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523249 JH261_RS05610 WP_274318289.1 1358912..1360306(-) (pilR) [Xanthomonas campestris pv. incanae strain CFBP6690]
ATGAACGAAACGAAAAATGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGTGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCTC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCACCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGTCACGACCTGTACTACCGCATCAACGTGATCGAGCTCCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGTCCGATTCCCTTGCTTACCCAGTCCGCGCTCGA
TGCACTGAACCAATACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGTGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTACCCGCCCACGGCGGCCATCGCCTTGCCGCCAGCCCCGGCAGCGCCGCC
ATCGAACCGCGCGAAGCGGTCGTCGACATCGATCCGGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAAACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTCAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494