Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH281_RS03000 Genome accession   NZ_CP066919
Coordinates   698764..700158 (+) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris pv. campestris strain CFBP6943     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 694127..706399 698764..700158 within 0


Gene organization within MGE regions


Location: 694127..706399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH281_RS02980 (JH281_02965) - 694127..694537 (-) 411 WP_029628876.1 DNA-binding protein -
  JH281_RS02985 (JH281_02970) sucD 694641..695516 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH281_RS02990 (JH281_02975) sucC 695541..696710 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH281_RS02995 (JH281_02980) - 696944..698554 (+) 1611 WP_040940804.1 HAMP domain-containing sensor histidine kinase -
  JH281_RS03000 (JH281_02985) pilR 698764..700158 (+) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  JH281_RS03005 (JH281_02990) pilB 700576..702309 (-) 1734 WP_227971327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH281_RS03010 (JH281_02995) - 702349..702759 (-) 411 WP_274316877.1 pilin -
  JH281_RS03015 (JH281_03000) - 702848..703264 (-) 417 WP_227971328.1 pilin -
  JH281_RS03020 (JH281_03005) pilC 703690..704892 (+) 1203 WP_227971345.1 type II secretion system F family protein Machinery gene
  JH281_RS03025 (JH281_03010) - 704899..705762 (+) 864 WP_040940797.1 A24 family peptidase -
  JH281_RS03030 (JH281_03015) coaE 705776..706399 (+) 624 WP_274316878.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=523163 JH281_RS03000 WP_042594919.1 698764..700158(+) (pilR) [Xanthomonas campestris pv. campestris strain CFBP6943]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523163 JH281_RS03000 WP_042594919.1 698764..700158(+) (pilR) [Xanthomonas campestris pv. campestris strain CFBP6943]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACTGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491