Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ15_RS11935 Genome accession   NZ_CP066884
Coordinates   2556073..2556579 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain HSP080     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2551073..2561579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ15_RS12535 - 2551990..2552121 (-) 132 WP_015728521.1 hypothetical protein -
  JGZ15_RS11920 (JGZ15_11920) - 2552290..2554281 (+) 1992 WP_200360804.1 catalase -
  JGZ15_RS11925 (JGZ15_11925) - 2554495..2555586 (-) 1092 WP_200360806.1 Abi family protein -
  JGZ15_RS11930 (JGZ15_11930) rpsR 2555777..2556019 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ15_RS11935 (JGZ15_11935) ssbA 2556073..2556579 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JGZ15_RS11940 (JGZ15_11940) rpsF 2556602..2556898 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ15_RS11945 (JGZ15_11945) sbi 2557235..2558761 (+) 1527 WP_200360808.1 Ig-binding surface protein Sbi/SpsK -
  JGZ15_RS11950 (JGZ15_11950) - 2558815..2559627 (-) 813 WP_200360810.1 ABC transporter permease subunit -
  JGZ15_RS11955 (JGZ15_11955) - 2559620..2560558 (-) 939 WP_200360812.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=522960 JGZ15_RS11935 WP_014614920.1 2556073..2556579(-) (ssbA) [Staphylococcus pseudintermedius strain HSP080]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=522960 JGZ15_RS11935 WP_014614920.1 2556073..2556579(-) (ssbA) [Staphylococcus pseudintermedius strain HSP080]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381