Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   BN140_RS01330 Genome accession   NC_018227
Coordinates   272014..273051 (+) Length   345 a.a.
NCBI ID   WP_014866164.1    Uniprot ID   I7LIP9
Organism   Methanoculleus bourgensis MS2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267014..278051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN140_RS01315 (BN140_0261) - 268040..268678 (+) 639 WP_048104419.1 hypothetical protein -
  BN140_RS01320 (BN140_0262) epdL 268665..271091 (+) 2427 WP_014866162.1 type II/IV secretion system ATPase subunit Machinery gene
  BN140_RS01325 (BN140_0263) epdJ 271088..272011 (+) 924 WP_014866163.1 type II secretion system F family protein Machinery gene
  BN140_RS01330 (BN140_0264) epdK 272014..273051 (+) 1038 WP_014866164.1 type II secretion system F family protein Machinery gene
  BN140_RS01335 (BN140_0265) - 273136..274629 (-) 1494 WP_024265328.1 cobyric acid synthase -
  BN140_RS01340 (BN140_0266) - 274688..276334 (+) 1647 WP_014866165.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  BN140_RS01345 (BN140_0267) yciH 276377..276682 (+) 306 WP_014866167.1 stress response translation initiation inhibitor YciH -
  BN140_RS01350 (BN140_0268) - 276896..277228 (+) 333 WP_238320432.1 type II secretion system protein E -
  BN140_RS01355 (BN140_0269) - 277643..277909 (-) 267 WP_014866169.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38046.24 Da        Isoelectric Point: 4.7557

>NTDB_id=52291 BN140_RS01330 WP_014866164.1 272014..273051(+) (epdK) [Methanoculleus bourgensis MS2]
MGFKEIIDDFLNRLPDRGEAVDAPVADAFEEQEQEIFGKIEDQRKYREGFYRFIRHPLRVMMEDPVTVLFISVPAALLLL
IGGSVSLVMSYGFGVLFTTTMIDDIFVFSLLIAIVPLAILDLKEALRVSSIEASLPNFFRDVAGMNDSGMTLPHAIHIVS
EGEYGALTPHVRQLDTEMSWGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKSERRN
GMMIYMIIIVMSFFVFLFVIGVLSSTFLSTMAEAGEAVAASGSSQTFMGTVDLFLYNRLFSHSALIQGLFSGLAAGIMGE
GRVLAGLKYSAIMVLIAWVAFRFFI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=52291 BN140_RS01330 WP_014866164.1 272014..273051(+) (epdK) [Methanoculleus bourgensis MS2]
ATGGGATTTAAAGAGATTATCGATGATTTCCTGAATAGATTGCCTGACCGTGGCGAGGCGGTGGATGCCCCGGTGGCTGA
CGCCTTCGAGGAGCAGGAGCAGGAGATCTTTGGCAAGATCGAGGACCAGCGGAAGTACCGGGAAGGGTTTTACCGGTTCA
TCAGGCACCCGCTCCGGGTGATGATGGAAGACCCGGTCACCGTCCTCTTTATATCGGTCCCGGCGGCGCTGCTCCTCCTC
ATCGGGGGGTCTGTGAGCCTGGTGATGTCCTATGGTTTCGGCGTCCTCTTCACGACGACGATGATCGATGATATCTTTGT
CTTCTCGCTCCTCATCGCTATCGTGCCGCTCGCGATCCTCGACCTCAAGGAGGCGCTCCGCGTCTCGAGCATCGAGGCCT
CCCTCCCGAACTTCTTCCGGGACGTGGCCGGGATGAACGACTCCGGCATGACGCTCCCGCACGCGATCCACATCGTCTCG
GAGGGCGAGTACGGGGCGCTCACGCCGCACGTCCGCCAGCTGGATACCGAGATGTCCTGGGGCGTCCCGTTCGTGGAGGC
TATCCGCCGGTTTGGGAAGACAGTGAACACCCCGCTTGCCGAGCGGAGTGTCGACCTGATTGCGCACGCGAGTTCCGCCG
GCGGTGACGTCAGCGAGGTGCTTCGGGCGGCGGCTCACGACGCCTATGAGTTCTTCAACCTGAAGTCGGAGCGGAGGAAC
GGTATGATGATCTACATGATCATCATCGTTATGTCGTTCTTTGTCTTCCTCTTCGTCATCGGGGTGCTCTCAAGCACCTT
CCTCTCCACCATGGCGGAGGCGGGCGAGGCGGTCGCGGCGTCAGGTTCGAGCCAGACGTTCATGGGTACCGTGGACCTCT
TCCTCTACAACCGGCTCTTCTCCCACTCCGCACTGATCCAGGGGCTCTTCTCGGGGCTTGCGGCGGGCATCATGGGCGAA
GGCCGGGTGCTCGCTGGGCTGAAGTACTCCGCCATCATGGTGCTGATCGCCTGGGTTGCGTTCCGGTTCTTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7LIP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

86.857

100

0.881

Multiple sequence alignment