Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   BN140_RS01320 Genome accession   NC_018227
Coordinates   268665..271091 (+) Length   808 a.a.
NCBI ID   WP_014866162.1    Uniprot ID   I7KXI9
Organism   Methanoculleus bourgensis MS2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263665..276091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN140_RS01300 (BN140_0258) - 264614..266497 (-) 1884 WP_014866158.1 PINc/VapC family ATPase -
  BN140_RS01305 (BN140_0259) hisI 266521..266886 (-) 366 WP_014866159.1 phosphoribosyl-AMP cyclohydrolase -
  BN140_RS01310 (BN140_0260) - 266893..267696 (-) 804 WP_014866161.1 A24 family peptidase C-terminal domain-containing protein -
  BN140_RS01315 (BN140_0261) - 268040..268678 (+) 639 WP_048104419.1 hypothetical protein -
  BN140_RS01320 (BN140_0262) epdL 268665..271091 (+) 2427 WP_014866162.1 type II/IV secretion system ATPase subunit Machinery gene
  BN140_RS01325 (BN140_0263) epdJ 271088..272011 (+) 924 WP_014866163.1 type II secretion system F family protein Machinery gene
  BN140_RS01330 (BN140_0264) epdK 272014..273051 (+) 1038 WP_014866164.1 type II secretion system F family protein Machinery gene
  BN140_RS01335 (BN140_0265) - 273136..274629 (-) 1494 WP_024265328.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 89691.57 Da        Isoelectric Point: 4.4373

>NTDB_id=52289 BN140_RS01320 WP_014866162.1 268665..271091(+) (epdL) [Methanoculleus bourgensis MS2]
MRAGEDEERELIATVRNLLTQSRKPGSSGEEVASSPPGDQPGEEEVREEAVLEDGGQPDPSPAPAPRGAGIRSLIDSVLG
SGGAGQRRASGNGDPARALLERIGESGAESGGEDATSPEAVEDMETEPEMPASPPERRDPFGIFAGRKKEADTSAPNDPG
AATADEPVIPARGHRASPGLPDPEVEEEPETDENISAGVVSVDELGNLADLILPKGATFEVEELHIKRNERQFDFVDNAR
VVSEFDELFTEAFSSATLAAAAAATEVPVEDVPEPRFGFLERFHLPKTVEVIEEYNPVLHGPLVDLSMRPSPGLEEIELY
PVNEPYAYVRVTYDSTTHEYTYNVLEPVLTPGEQELFGEIKERLFETLDITTRDLTRDEARKALRDAANTIIADYGIRLE
PPGREKILYHVEKEFLGDGLIDPVMHDGYIEDISCDGVGSAIFVYHTTYESMKTSLIYRDAAELDSFVTKLAQRAGKYIS
IAEPMLDATMSDGSRIQMTLGSEVTAHGSTFTIRKFREEPITPTDLIEWHTFSPLGIAFLWLAVENAKSCIFAGGTASGK
TTTLNAISLFIPPLAKIVTLEDTRELKLPHPNWIPSITRDSFSQDGRGEIDMYELLRAALRQRPEYILVGEVRGREALTL
FQAMSTGHVTYATMHADSVASAVHRLENPPINVPRNMLSALSLMSIQVQARVGGQRIRRNKQLIEILDIDPRTNELITNE
VFRWHPATDEIRYSGKSYILEQIMEDRGWSEERMQEELKRRQEVLEWMRIKKIRYFRDVSKILVSYFRDPETVIQRVRSD
LYGEGGSA

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=52289 BN140_RS01320 WP_014866162.1 268665..271091(+) (epdL) [Methanoculleus bourgensis MS2]
ATGAGAGCAGGTGAAGATGAAGAACGTGAATTGATAGCAACGGTCAGGAATCTTCTCACACAATCCAGGAAACCGGGGAG
CAGCGGCGAGGAGGTCGCATCCTCCCCGCCCGGGGACCAGCCTGGTGAGGAAGAGGTCCGGGAAGAAGCGGTTCTGGAGG
ACGGGGGGCAACCAGACCCCTCGCCCGCACCGGCACCGAGGGGAGCGGGTATCCGTTCGCTCATCGACTCGGTGCTCGGG
TCGGGGGGCGCCGGCCAGCGGCGCGCATCAGGCAATGGTGATCCCGCCAGGGCGCTCCTCGAGCGGATTGGAGAGAGTGG
TGCAGAATCGGGCGGGGAGGATGCGACCTCCCCAGAGGCGGTGGAGGATATGGAGACAGAGCCGGAGATGCCGGCCTCTC
CGCCGGAGCGCCGTGACCCCTTCGGCATCTTTGCGGGGCGGAAGAAGGAGGCGGACACTTCCGCCCCAAATGACCCCGGG
GCGGCGACGGCTGACGAGCCGGTGATCCCGGCACGCGGTCACCGCGCCTCTCCCGGTCTCCCCGACCCGGAGGTGGAAGA
AGAGCCCGAAACCGACGAGAACATTTCTGCCGGTGTGGTGTCGGTCGACGAACTCGGGAACCTGGCCGACCTGATCCTCC
CGAAGGGTGCGACATTTGAGGTCGAGGAGCTGCACATTAAACGGAACGAGCGCCAGTTCGACTTTGTCGATAACGCCCGG
GTTGTATCTGAGTTTGATGAACTCTTCACCGAGGCGTTTTCTTCTGCCACGCTTGCCGCGGCCGCGGCGGCCACGGAGGT
CCCGGTTGAGGACGTCCCGGAGCCCCGGTTCGGGTTCCTCGAGCGGTTCCACCTCCCGAAGACTGTGGAGGTGATCGAGG
AGTACAACCCTGTCCTCCACGGGCCGCTCGTCGACCTCTCGATGCGGCCGTCGCCGGGACTGGAGGAGATCGAACTCTAC
CCGGTGAACGAGCCGTATGCCTATGTCCGGGTGACTTACGACAGCACGACGCACGAGTACACCTACAATGTCCTCGAACC
CGTGCTCACGCCCGGTGAACAGGAACTCTTCGGGGAGATCAAGGAGCGCCTCTTTGAGACGCTCGACATCACCACCCGGG
ACCTCACCCGCGATGAGGCAAGGAAGGCGCTCCGGGACGCGGCGAACACCATCATCGCCGATTACGGGATCCGCCTCGAG
CCGCCCGGGCGGGAGAAGATCCTCTATCACGTGGAGAAGGAGTTCCTCGGCGACGGGCTGATCGACCCGGTGATGCATGA
CGGCTACATCGAGGATATCTCCTGCGACGGCGTAGGAAGCGCCATCTTCGTCTATCACACGACGTATGAATCGATGAAGA
CGAGCCTCATCTACCGCGATGCTGCCGAACTTGATTCGTTCGTCACGAAACTTGCGCAACGGGCCGGGAAGTACATCTCG
ATCGCTGAACCGATGCTTGACGCCACAATGAGCGACGGGTCACGTATCCAGATGACGCTCGGGTCAGAGGTGACCGCCCA
CGGCTCGACGTTCACGATCCGAAAGTTCCGTGAGGAGCCGATTACGCCGACCGATCTTATCGAGTGGCACACCTTCTCGC
CGCTCGGGATCGCCTTCCTCTGGCTTGCGGTCGAGAACGCCAAGTCCTGCATATTTGCCGGCGGGACGGCGTCCGGGAAG
ACGACGACCTTGAACGCCATATCGCTCTTCATCCCGCCGCTTGCAAAGATCGTGACGCTTGAGGATACCCGTGAGTTGAA
ACTCCCTCACCCGAACTGGATCCCGAGCATCACCCGGGACTCGTTCTCGCAGGACGGGCGGGGCGAGATCGATATGTATG
AACTCCTGCGTGCCGCCCTCCGGCAGCGTCCTGAGTACATCCTGGTCGGCGAGGTCCGTGGCCGCGAGGCCCTGACGCTT
TTCCAAGCGATGAGCACCGGACACGTCACCTACGCGACGATGCACGCAGACTCGGTGGCGAGCGCCGTCCACCGTCTGGA
GAACCCGCCGATCAACGTGCCGAGAAACATGCTCTCGGCGCTCTCCCTGATGTCAATCCAGGTGCAGGCCCGGGTTGGCG
GCCAGCGGATCCGGCGGAACAAGCAGCTCATCGAGATCCTGGATATCGATCCCAGGACGAACGAGCTGATCACGAACGAG
GTCTTCAGGTGGCACCCGGCGACCGATGAGATCCGCTACTCCGGCAAGTCCTACATCCTTGAGCAGATCATGGAGGACCG
GGGATGGAGCGAGGAGCGGATGCAGGAAGAACTGAAACGGCGGCAGGAGGTGCTCGAATGGATGCGCATCAAGAAGATCC
GCTACTTCCGTGACGTGAGCAAGATCCTGGTCTCCTACTTCCGTGACCCCGAGACGGTCATCCAGCGGGTGCGCTCCGAC
CTCTACGGGGAGGGTGGTTCCGCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(429-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7KXI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

77.987

92.203

0.719

Multiple sequence alignment