Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   P423_RS14735 Genome accession   NC_022648
Coordinates   2910737..2911474 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli JJ1886     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2905737..2916474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P423_RS14720 (P423_14175) clpC 2906191..2908764 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  P423_RS14725 (P423_14180) yfiH 2908894..2909625 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  P423_RS14730 (P423_14185) rluD 2909622..2910602 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  P423_RS14735 (P423_14190) comL 2910737..2911474 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  P423_RS14745 (P423_14195) raiA 2911744..2912085 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  P423_RS30030 pheL 2912189..2912236 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  P423_RS14750 (P423_14200) pheA 2912335..2913495 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  P423_RS14755 (P423_14205) tyrA 2913538..2914659 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  P423_RS14760 (P423_14210) aroF 2914670..2915740 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  P423_RS14765 (P423_14215) yfiL 2915950..2916315 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=52231 P423_RS14735 WP_000197686.1 2910737..2911474(+) (comL) [Escherichia coli JJ1886]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=52231 P423_RS14735 WP_000197686.1 2910737..2911474(+) (comL) [Escherichia coli JJ1886]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment