Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JGY90_RS04890 Genome accession   NZ_CP066726
Coordinates   1042253..1042882 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1324     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1037253..1047882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY90_RS04865 (JGY90_04835) - 1038099..1039085 (-) 987 WP_042362407.1 aromatic acid exporter family protein -
  JGY90_RS04870 (JGY90_04840) map 1039262..1040014 (+) 753 WP_039069016.1 type I methionyl aminopeptidase -
  JGY90_RS04875 (JGY90_04845) - 1040119..1040505 (+) 387 WP_042362408.1 hypothetical protein -
  JGY90_RS04880 (JGY90_04850) liaF 1040522..1041223 (+) 702 WP_042362409.1 cell wall-active antibiotics response protein LiaF -
  JGY90_RS04885 (JGY90_04855) vraS 1041220..1042263 (+) 1044 WP_042362410.1 sensor histidine kinase Regulator
  JGY90_RS04890 (JGY90_04860) vraR 1042253..1042882 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  JGY90_RS04895 (JGY90_04865) - 1043151..1044296 (-) 1146 WP_042362411.1 YihY/virulence factor BrkB family protein -
  JGY90_RS04900 (JGY90_04870) - 1044652..1044936 (-) 285 WP_042362412.1 hypothetical protein -
  JGY90_RS04905 (JGY90_04875) - 1044943..1045407 (-) 465 WP_029378983.1 low molecular weight protein-tyrosine-phosphatase -
  JGY90_RS04910 (JGY90_04880) - 1045542..1045745 (+) 204 WP_017723498.1 DUF1128 family protein -
  JGY90_RS04915 (JGY90_04885) - 1045763..1047001 (+) 1239 WP_069794719.1 aminopeptidase -
  JGY90_RS04920 (JGY90_04890) - 1047090..1047611 (+) 522 WP_042362415.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=522167 JGY90_RS04890 WP_017723494.1 1042253..1042882(+) (vraR) [Staphylococcus xylosus strain TMW 2.1324]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522167 JGY90_RS04890 WP_017723494.1 1042253..1042882(+) (vraR) [Staphylococcus xylosus strain TMW 2.1324]
ATGCCGATTAAAGTTTTATTTGTGGATGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCCGGAAAGGAAGCAATTGAAAAGGCTCACCAATTGAATCCAGATTTAATATTAA
TGGATTTATTAATGGATGATATGGACGGTGTTGAAGCAACCGAACAAGTAAAAAAAGATTTACCTCATATGAAAGTAGTT
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCACTTGATTCTGGCGTTGATAGCTACATTTTAAAAACAAC
GAGTGCTAGTGATATTGCAGAGGCAATAAGAAAAACCTATAATAATGAGTCGGTTTTTGAAGCGGAAGTTTTAGTTAAGA
TGAGAAATAGAATGAAGCAACGTGCAGAATTATATGAAATGTTAACAGAACGTGAGATGGAAATCTTATTATTAATAGCA
AAAGGCTACTCAAACCAAGAAATAGCAAGCGCCTCACATATTACAATTAAAACCGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368