Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   JGY88_RS05010 Genome accession   NZ_CP066721
Coordinates   1068777..1069406 (+) Length   209 a.a.
NCBI ID   WP_017723494.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063777..1074406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS04985 (JGY88_04950) - 1064623..1065609 (-) 987 WP_042362407.1 aromatic acid exporter family protein -
  JGY88_RS04990 (JGY88_04955) map 1065786..1066538 (+) 753 WP_039069016.1 type I methionyl aminopeptidase -
  JGY88_RS04995 (JGY88_04960) - 1066643..1067029 (+) 387 WP_042362408.1 hypothetical protein -
  JGY88_RS05000 (JGY88_04965) liaF 1067046..1067747 (+) 702 WP_042362409.1 cell wall-active antibiotics response protein LiaF -
  JGY88_RS05005 (JGY88_04970) vraS 1067744..1068787 (+) 1044 WP_042362410.1 sensor histidine kinase Regulator
  JGY88_RS05010 (JGY88_04975) vraR 1068777..1069406 (+) 630 WP_017723494.1 response regulator transcription factor Regulator
  JGY88_RS05015 (JGY88_04980) - 1069671..1070816 (-) 1146 WP_225486845.1 YihY/virulence factor BrkB family protein -
  JGY88_RS05020 (JGY88_04985) - 1071172..1071456 (-) 285 WP_225486846.1 YtxH domain-containing protein -
  JGY88_RS05025 (JGY88_04990) - 1071463..1071927 (-) 465 WP_029378983.1 low molecular weight protein-tyrosine-phosphatase -
  JGY88_RS05030 (JGY88_04995) - 1072062..1072265 (+) 204 WP_225486847.1 DUF1128 family protein -
  JGY88_RS05035 (JGY88_05000) - 1072283..1073521 (+) 1239 WP_225486848.1 aminopeptidase -
  JGY88_RS05040 (JGY88_05005) - 1073610..1074131 (+) 522 WP_101105510.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23734.27 Da        Isoelectric Point: 4.7778

>NTDB_id=522133 JGY88_RS05010 WP_017723494.1 1068777..1069406(+) (vraR) [Staphylococcus xylosus strain 2.1523]
MPIKVLFVDDHEMVRIGISSYLSTQPDIDVVGEGKSGKEAIEKAHQLNPDLILMDLLMDDMDGVEATEQVKKDLPHMKVV
MLTSYIEDNEVYRALDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=522133 JGY88_RS05010 WP_017723494.1 1068777..1069406(+) (vraR) [Staphylococcus xylosus strain 2.1523]
ATGCCGATTAAAGTTTTATTTGTGGATGACCATGAAATGGTCCGAATTGGAATATCTAGCTATTTATCAACACAACCAGA
TATTGATGTTGTAGGAGAAGGGAAATCCGGAAAGGAAGCAATTGAAAAGGCTCACCAATTGAATCCAGATTTAATATTAA
TGGATTTATTAATGGATGATATGGACGGTGTTGAAGCAACCGAACAAGTAAAAAAAGATTTACCACATATGAAAGTAGTC
ATGCTTACGAGTTATATAGAAGATAACGAAGTATACCGTGCACTTGATTCTGGTGTGGATAGCTACATTTTAAAAACAAC
GAGTGCTAGTGATATTGCAGAGGCAATAAGAAAAACCTATAATAATGAGTCGGTTTTTGAAGCGGAAGTTTTAGTTAAGA
TGAGAAATAGAATGAAGCAACGTGCAGAATTGTATGAAATGTTAACAGAACGTGAGATGGAAATCTTATTATTAATAGCA
AAAGGCTACTCAAACCAAGAAATAGCAAGCGCCTCACATATAACAATTAAAACTGTTAAAACACATGTAAGTAATATTTT
GAGTAAATTAGAAGTACAAGATAGAACACAAGCTGTTATTTACGCTTTTCAACATAACTTAATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

88.517

100

0.885
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368