Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGY87_RS12620 Genome accession   NZ_CP066719
Coordinates   2650533..2651048 (-) Length   171 a.a.
NCBI ID   WP_029378816.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain TMW 2.1602     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2645533..2656048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY87_RS13235 - 2647216..2650026 (-) 2811 Protein_2445 amino acid adenylation domain-containing protein -
  JGY87_RS12620 (JGY87_12560) ssbA 2650533..2651048 (-) 516 WP_029378816.1 single-stranded DNA-binding protein Machinery gene
  JGY87_RS12625 (JGY87_12565) rpsF 2651067..2651372 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  JGY87_RS12630 (JGY87_12570) - 2651801..2652607 (+) 807 WP_029378815.1 GH25 family lysozyme -
  JGY87_RS12635 (JGY87_12575) ychF 2652758..2653855 (-) 1098 WP_029378814.1 redox-regulated ATPase YchF -
  JGY87_RS12640 (JGY87_12580) - 2653855..2654070 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  JGY87_RS12645 (JGY87_12585) - 2654092..2654976 (-) 885 WP_029378812.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19075.58 Da        Isoelectric Point: 4.9056

>NTDB_id=522121 JGY87_RS12620 WP_029378816.1 2650533..2651048(-) (ssbA) [Staphylococcus xylosus strain TMW 2.1602]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNTSNNNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=522121 JGY87_RS12620 WP_029378816.1 2650533..2651048(-) (ssbA) [Staphylococcus xylosus strain TMW 2.1602]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTAGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGTGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCAAACGGA
CCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.637
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

64.327

0.38