Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ50_RS12175 Genome accession   NZ_CP066713
Coordinates   2534304..2534810 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain DSP026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2529304..2539810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ50_RS12645 - 2530223..2530354 (-) 132 WP_015728521.1 hypothetical protein -
  JGZ50_RS12160 (JGZ50_12160) - 2530523..2532514 (+) 1992 WP_014614918.1 catalase -
  JGZ50_RS12570 (JGZ50_12165) - 2532728..2533489 (-) 762 WP_341473534.1 Abi family protein -
  JGZ50_RS12575 - 2533458..2533817 (-) 360 WP_228064226.1 hypothetical protein -
  JGZ50_RS12170 (JGZ50_12170) rpsR 2534008..2534250 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ50_RS12175 (JGZ50_12175) ssbA 2534304..2534810 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JGZ50_RS12180 (JGZ50_12180) rpsF 2534833..2535129 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ50_RS12185 (JGZ50_12185) sbi 2535466..2536962 (+) 1497 WP_143951553.1 Ig-binding surface protein Sbi/SpsK -
  JGZ50_RS12190 (JGZ50_12190) - 2537016..2537825 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  JGZ50_RS12195 (JGZ50_12195) - 2537818..2538753 (-) 936 WP_110148392.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=521947 JGZ50_RS12175 WP_014614920.1 2534304..2534810(-) (ssbA) [Staphylococcus pseudintermedius strain DSP026]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=521947 JGZ50_RS12175 WP_014614920.1 2534304..2534810(-) (ssbA) [Staphylococcus pseudintermedius strain DSP026]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381