Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JGZ11_RS11845 Genome accession   NZ_CP066710
Coordinates   2519325..2519831 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain DSP034     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2514325..2524831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGZ11_RS11830 (JGZ11_11830) - 2515541..2517532 (+) 1992 WP_063278726.1 catalase -
  JGZ11_RS12280 - 2517746..2518120 (-) 375 WP_157980673.1 Abi family protein -
  JGZ11_RS12400 - 2518117..2518491 (-) 375 WP_339327619.1 Abi family protein -
  JGZ11_RS12365 - 2518383..2518838 (-) 456 WP_277922836.1 Abi family protein -
  JGZ11_RS11840 (JGZ11_11840) rpsR 2519029..2519271 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  JGZ11_RS11845 (JGZ11_11845) ssbA 2519325..2519831 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  JGZ11_RS11850 (JGZ11_11850) rpsF 2519854..2520150 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  JGZ11_RS11855 (JGZ11_11855) sbi 2520487..2521983 (+) 1497 WP_065520724.1 Ig-binding surface protein Sbi/SpsK -
  JGZ11_RS11860 (JGZ11_11860) - 2522037..2522846 (-) 810 WP_020220246.1 ABC transporter permease subunit -
  JGZ11_RS11865 (JGZ11_11865) - 2522839..2523774 (-) 936 WP_199273799.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=521851 JGZ11_RS11845 WP_014614920.1 2519325..2519831(-) (ssbA) [Staphylococcus pseudintermedius strain DSP034]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=521851 JGZ11_RS11845 WP_014614920.1 2519325..2519831(-) (ssbA) [Staphylococcus pseudintermedius strain DSP034]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381