Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JMO16_RS08250 Genome accession   NZ_CP080566
Coordinates   1673866..1674840 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL20835 isolate HL20835     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1668866..1679840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO16_RS08205 (JMO16_08205) - 1669285..1669809 (-) 525 WP_001015120.1 shikimate kinase -
  JMO16_RS08210 (JMO16_08210) - 1669799..1669945 (-) 147 WP_001792109.1 hypothetical protein -
  JMO16_RS08215 (JMO16_08215) comGF 1670042..1670539 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  JMO16_RS08220 (JMO16_08220) comGE 1670457..1670756 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  JMO16_RS08225 (JMO16_08225) comGD 1670743..1671189 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JMO16_RS08230 (JMO16_08230) comGC 1671167..1671478 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JMO16_RS08235 (JMO16_08235) - 1671492..1671929 (-) 438 Protein_1629 type II secretion system F family protein -
  JMO16_RS08240 (JMO16_08240) - 1672029..1673201 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  JMO16_RS08245 (JMO16_08245) - 1673253..1673894 (-) 642 Protein_1631 type II secretion system F family protein -
  JMO16_RS08250 (JMO16_08250) comGA 1673866..1674840 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JMO16_RS08255 (JMO16_08255) - 1674892..1675515 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JMO16_RS08260 (JMO16_08260) - 1675512..1675841 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JMO16_RS08265 (JMO16_08265) - 1675841..1676827 (-) 987 WP_000161311.1 ROK family glucokinase -
  JMO16_RS08270 (JMO16_08270) - 1676824..1677027 (-) 204 WP_000087561.1 YqgQ family protein -
  JMO16_RS08275 (JMO16_08275) - 1677008..1678471 (-) 1464 WP_042109137.1 rhomboid family intramembrane serine protease -
  JMO16_RS08280 (JMO16_08280) - 1678483..1679022 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  JMO16_RS08285 (JMO16_08285) rpmG 1679231..1679380 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=521073 JMO16_RS08250 WP_000697220.1 1673866..1674840(-) (comGA) [Staphylococcus aureus strain HL20835 isolate HL20835]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=521073 JMO16_RS08250 WP_000697220.1 1673866..1674840(-) (comGA) [Staphylococcus aureus strain HL20835 isolate HL20835]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1